diff --git a/README.md b/README.md index e1aabbcfe4bb05586d70fa61627dd9bb9fd853da..df6c34b413e2ea12ac85471d75ed438b672b1932 100644 --- a/README.md +++ b/README.md @@ -63,18 +63,23 @@ If Database exist : ## Example +The directory example contains allelic profiles file of Elizabethkingia. +This file is download on the site following : http://bigsdb.pasteur.fr/elizabethkingia/elizabethkingia.html +It contains 183 allelic profiles of the bacteria Elizabethkingia, with 1546 loci. +Identifiants bacterial is in column 1-2 and all others is loci. + In the example folder, you have example files from the following command: - Create DataBase LIN : ```bash -python LINcode.py -i BIGSdb.txt -t 1-2 -l 3- -b 1,20,45,66,80,90,95,96,98,99,100 +python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,95,99.67,99.74,99.81,99.87,99.94,100.0 ``` - Update DataBase LIN : ```bash -python LINcode.py -i new_Ecoli.txt -r BIGSdb.lin -t 1-2 -l 3- +python LINcode.py -i new_Ecoli.txt -r BIGSdb_eliza.txt -t 1-2 -l 3- ``` _______________________________________________________________________________