diff --git a/README.md b/README.md index a103ecbd7c3ce1348ba106a9c0edde1e9dc8633d..debb07567f8a9ba88a71fed298970e8e0ee45737 100644 --- a/README.md +++ b/README.md @@ -75,7 +75,7 @@ In the example folder, you have example files from the following command: ### Create DataBase LIN : ```bash -python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 +python LINcoding.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 ``` This command line allows writing 2 files : @@ -109,20 +109,20 @@ id isolate [ 10. 20. 50. 80. 99.68 99.74 99.81 99.87 99.94 100. ### Update DataBase LIN : ```bash -python LINcode.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3- +python LINcoding.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3- ``` _______________________________________________________________________________ ### Create DataBase LIN + prefix tree without length of branches (newick) : ```bash -python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y +python LINcoding.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y ``` ### Create DataBase LIN + prefix tree with length of branches (newick) : ```bash -python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y -lg Y +python LINcoding.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y -lg Y ``` ## Output files