From 3ddb8afa3623faa28745dc236164f61dd59157f4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?M=C3=A9lanie=20=20HENNART?= <melanie.hennart@pasteur.fr>
Date: Wed, 30 May 2018 11:17:31 +0200
Subject: [PATCH] Update README.md

---
 README.md | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index a103ecb..debb075 100644
--- a/README.md
+++ b/README.md
@@ -75,7 +75,7 @@ In the example folder, you have example files from the following command:
 ### Create DataBase LIN :  
 
 ```bash
-python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100
+python LINcoding.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100
 ```
 This command line allows writing 2 files :
 
@@ -109,20 +109,20 @@ id	isolate	[ 10.    20.    50.    80.    99.68  99.74  99.81  99.87  99.94 100.
 ### Update DataBase LIN :
 
 ```bash         
-python LINcode.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3-
+python LINcoding.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3-
 ```
 _______________________________________________________________________________
 
 ### Create DataBase LIN + prefix tree without length of branches (newick) :   
 
 ```bash
-python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y 
+python LINcoding.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y 
 ```
 
 ### Create DataBase LIN + prefix tree with length of branches (newick) :
 
 ```bash
-python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y -lg Y 
+python LINcoding.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y -lg Y 
 ```
 
 ## Output files
-- 
GitLab