diff --git a/README.md b/README.md index 22e1f117c064f49760ab3ff0da533ea8b62c14c3..9d2281637236188478a382356cb51aa7b4e9c8f4 100644 --- a/README.md +++ b/README.md @@ -65,12 +65,14 @@ If Database exist : The directory example contains allelic profiles file of Elizabethkingia. This file is download on the site following : http://bigsdb.pasteur.fr/elizabethkingia/elizabethkingia.html -It contains 183 allelic profiles of the bacteria Elizabethkingia, with 1546 loci. +BIGSdb_eliza.txt contains 100 allelic profiles of the bacteria Elizabethkingia, with 1546 loci. +BIGSdb_eliza_update.txt contains 12 allelic profiles of the bacteria Elizabethkingia, with 1546 loci. +It's for update when BIGSdb_eliza.lin is create. Identifiants bacterial is in column 1-2 and all others is loci. In the example folder, you have example files from the following command: -# Create DataBase LIN : +### Create DataBase LIN : ```bash python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 @@ -104,7 +106,7 @@ id isolate [ 10. 20. 50. 80. 99.68 99.74 99.81 99.87 99.94 100. 22 SRR3240397 0_0_0_0_0_0_0_0_0_0 ``` -# Update DataBase LIN : +### Update DataBase LIN : ```bash python LINcode.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3-