From a8e1796aedee14689bd8e5b56c56239714760e72 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C3=A9lanie=20=20HENNART?= <melanie.hennart@pasteur.fr> Date: Wed, 30 May 2018 11:03:30 +0200 Subject: [PATCH] Update README.md --- README.md | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 22e1f11..9d22816 100644 --- a/README.md +++ b/README.md @@ -65,12 +65,14 @@ If Database exist : The directory example contains allelic profiles file of Elizabethkingia. This file is download on the site following : http://bigsdb.pasteur.fr/elizabethkingia/elizabethkingia.html -It contains 183 allelic profiles of the bacteria Elizabethkingia, with 1546 loci. +BIGSdb_eliza.txt contains 100 allelic profiles of the bacteria Elizabethkingia, with 1546 loci. +BIGSdb_eliza_update.txt contains 12 allelic profiles of the bacteria Elizabethkingia, with 1546 loci. +It's for update when BIGSdb_eliza.lin is create. Identifiants bacterial is in column 1-2 and all others is loci. In the example folder, you have example files from the following command: -# Create DataBase LIN : +### Create DataBase LIN : ```bash python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 @@ -104,7 +106,7 @@ id isolate [ 10. 20. 50. 80. 99.68 99.74 99.81 99.87 99.94 100. 22 SRR3240397 0_0_0_0_0_0_0_0_0_0 ``` -# Update DataBase LIN : +### Update DataBase LIN : ```bash python LINcode.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3- -- GitLab