From bcb29efc0e2b9803f5393ba0fffe8608c05e88bd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C3=A9lanie=20=20HENNART?= <melanie.hennart@pasteur.fr> Date: Wed, 30 May 2018 11:19:01 +0200 Subject: [PATCH] Update LINcoding.py --- LINcoding.py | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/LINcoding.py b/LINcoding.py index 8fedfa9..0bd226c 100644 --- a/LINcoding.py +++ b/LINcoding.py @@ -432,19 +432,19 @@ parser = argparse.ArgumentParser() parser.add_argument("-i", dest="fichier_tsv", type=str, required=True, help="file name : file of profiles isolates") -parser.add_argument("-r", dest="fichier_lin", type=str, help="file name .lin") -parser.add_argument("-s", dest="fichier_txt", type=str, help="file name to sort strains") -parser.add_argument("-ns", dest="sort", type=str, help="Y for no sort strains") -parser.add_argument("-a", dest="alea", type=str, help="Y for ordre aleatoire") +parser.add_argument("-r", dest="fichier_lin", type=str, help="file name .lin") +parser.add_argument("-s", dest="fichier_txt", type=str, help="file name to sort strains") +parser.add_argument("-ns", dest="sort", type=str, help="Y for no sort strains") +parser.add_argument("-a", dest="alea", type=str, help="Y for ordre aleatoire") -parser.add_argument("-t", dest="id", type=str, help="numero(s) column(s) name isolats, ex : 0-2,6") -parser.add_argument("-l", dest="loci", type=str, help="numero(s) column(s) name isolats, ex : 2-265,300") +parser.add_argument("-t", dest="id", type=str, help="numero(s) column(s) name isolats, ex : 0-2,6") +parser.add_argument("-l", dest="loci", type=str, help="numero(s) column(s) name isolats, ex : 2-265,300") -parser.add_argument("-b", dest="bins", type=str, help="bins, ex : 5,20,80,95,100") -parser.add_argument("-o", dest="fichier_sorti", type=str, help="file out") +parser.add_argument("-b", dest="bins", type=str, help="bins, ex : 5,20,80,95,100") +parser.add_argument("-o", dest="fichier_sorti", type=str, help="file out") -parser.add_argument("-tree", dest="t", type=str, required=True, help="create tree : Y ") -parser.add_argument("-lg", dest="len_branche", type=str, help="Y => longueur des branches") +parser.add_argument("-tree", dest="t", type=str, help="create tree : Y ") +parser.add_argument("-lg" , dest="len_branche", type=str, help="Y => longueur des branches") args = parser.parse_args() -- GitLab