From e7e1bc41aec05b0be1b3bc16aa574990e26c37d9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C3=A9lanie=20=20HENNART?= <melanie.hennart@pasteur.fr> Date: Wed, 30 May 2018 11:00:19 +0200 Subject: [PATCH] Update README.md --- README.md | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 24fff83..22e1f11 100644 --- a/README.md +++ b/README.md @@ -70,7 +70,7 @@ Identifiants bacterial is in column 1-2 and all others is loci. In the example folder, you have example files from the following command: -- Create DataBase LIN : +# Create DataBase LIN : ```bash python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 @@ -101,8 +101,10 @@ id isolate [ 10. 20. 50. 80. 99.68 99.74 99.81 99.87 99.94 100. 54 CSID_3000516026 0_0_0_0_0_0_0_0_0_0 ... ... -22 SRR3240397 0_0_0_0_0_0_0_0_0_0``` -- Update DataBase LIN : +22 SRR3240397 0_0_0_0_0_0_0_0_0_0 +``` + +# Update DataBase LIN : ```bash python LINcode.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3- -- GitLab