From 1adaefa56f35b1d7efa3072153e0b18dbed1ef27 Mon Sep 17 00:00:00 2001
From: mrethore <martin.rethoret-pasty@pasteur.fr>
Date: Wed, 21 Aug 2024 12:13:50 +0200
Subject: [PATCH] Minor update
---
module/utils.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/module/utils.py b/module/utils.py
index d28cdb8..3eff1c0 100644
--- a/module/utils.py
+++ b/module/utils.py
@@ -153,7 +153,7 @@ def armfinder_to_table(data_resistance:pd.DataFrame) -> pd.DataFrame:
gene = data_resistance['Gene symbol'][res] + dico_Method[data_resistance['Method'][res]]
# Search for certain cases of interruption due to a contig end that AMRfinder is unable to find.
if is_contig_edge(data_resistance.iloc[res]) :
- data_resistance['Method'][res] = "CTRL_CONTIG_END"
+ data_resistance.loc[res, 'Method'] = "CTRL_CONTIG_END"
if ('tox' in data_resistance['Gene symbol'][res]) and \
(float(data_resistance['% Coverage of reference sequence'][res]) != 100.00) and \
--
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