From 35d2083e7f99588283b5ffaed35479e3a2bf4e7a Mon Sep 17 00:00:00 2001 From: mrethore <martin.rethoret-pasty@pasteur.fr> Date: Tue, 20 Aug 2024 11:14:39 +0200 Subject: [PATCH] removing fam.tab duplicate --- .../Corynebacterium_diphtheriae/fam_Cd.tab | 18 ------------------ 1 file changed, 18 deletions(-) diff --git a/data/resistance/Corynebacterium_diphtheriae/fam_Cd.tab b/data/resistance/Corynebacterium_diphtheriae/fam_Cd.tab index cdebec0..e378a8b 100644 --- a/data/resistance/Corynebacterium_diphtheriae/fam_Cd.tab +++ b/data/resistance/Corynebacterium_diphtheriae/fam_Cd.tab @@ -11,13 +11,10 @@ narJ MOLECULAR_NITRATE narJ - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 MOLECULAR_BIOV narH MOLECULAR_NITRATE narH - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 MOLECULAR_BIOVAR MOLECULAR_BIOVAR narIJHK narIJHK Corynebacterium diphtheriae nitrate reductase subunit beta narH narG MOLECULAR_NITRATE narG - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 MOLECULAR_BIOVAR MOLECULAR_BIOVAR narG narG Corynebacterium diphtheriae nitrate reductase subunit alpha narG narK MOLECULAR_NITRATE narK - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 MOLECULAR_BIOVAR MOLECULAR_BIOVAR narIJHK narIJHK Corynebacterium diphtheriae MFS transporter narK -pbp2m AMR pbp2m - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR BETA-LACTAM PENICILLIN Corynebacterium diphtheriae beta-lactam resistant_PBP2M VIRULENCE_Corynebacterium VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE -tox VIRULENCE_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE tox_pseudotuberculosis tox tox_pseudotuberculosis - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE TOXIN TOXIN Corynebacterium pseudotuberculosis diphtheria toxin precursor tox tox_ulcerans tox tox_ulcerans - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE TOXIN TOXIN Corynebacterium ulcerans diphtheria toxin precursor tox tox_diphtheriae tox tox_diphtheriae - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE TOXIN TOXIN Corynebacterium diphtheriae diphtheria toxin precursor tox -pld VIRULENCE_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE pld_pseudotuberculosis pld pld_pseudotuberculosis - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE OTHER_TOXINS OTHER_TOXINS Corynebacterium pseudotuberculosis Phospholipase D pld_ulcerans pld pld_ulcerans - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE OTHER_TOXINS OTHER_TOXINS Corynebacterium ulcerans Phospholipase D rbp VIRULENCE_Corynebacterium rbp - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE OTHER_TOXINS OTHER_TOXINS Putative ribosome binding protein @@ -39,25 +36,10 @@ DIP2014 ADHESIN_Corynebacterium DIP2014 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.0 RhuM ADHESIN_Corynebacterium RhuM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN RhuM-like protein cpp ADHESIN_Corynebacterium cpp - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN Endoglycosidase of the EndoE family DIP2093 ADHESIN_Corynebacterium DIP2093 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN Csh family fibrillar adhesin-related protein -cbpA ADHESIN_Corynebacterium cbpA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN Cna B-type domain-containing protein DIP0543 ADHESIN_Corynebacterium DIP0543 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN VIRULENCE/ADHESIN VIRULENCE/ADHESIN Putative exo-sialidase NanH SpaA-type_pili ADHESIN_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 ADHESIN ADHESIN -spaA SpaA-type_pili spaA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaA-type_pili_diphtheriae SpaA-type_pili_diphtheriae SpaA-type pili major subunit SpaA -srtA SpaA-type_pili srtA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaA-type_pili_diphtheriae SpaA-type_pili_diphtheriae Fimbrial associated sortase srtA -spaB SpaA-type_pili spaB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaA-type_pili_diphtheriae SpaA-type_pili_diphtheriae SpaA-type pili minor subunit SpaB -spaC SpaA-type_pili spaC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaA-type_pili_diphtheriae SpaA-type_pili_diphtheriae SpaA-type pili minor subunit SpaC SpaD-type_pili ADHESIN_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 ADHESIN ADHESIN -srtB SpaD-type_pili srtB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae Fimbrial associated sortase srtB -spaD SpaD-type_pili spaD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae SpaD-type pili minor subunit SpaD -srtC SpaD-type_pili srtC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae Fimbrial associated sortase srtC -spaE SpaD-type_pili spaE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae SpaD-type pili minor subunit SpaE -spaF SpaD-type_pili spaF - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaD-type_pili_diphtheriae SpaD-type_pili_diphtheriae SpaD-type pili minor subunit SpaF SpaH-type_pili ADHESIN_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 ADHESIN ADHESIN -spaI SpaH-type_pili spaI - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae SpaH-type pili minorsubunit SpaI -srtE SpaH-type_pili srtE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae Fimbrial associated sortase srtE -srtD SpaH-type_pili srtD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae Fimbrial associated sortase srtD -spaH SpaH-type_pili spaH - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae SpaH-type pili minor subunit SpaH -spaG SpaH-type_pili spaG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SpaH-type_pili_diphtheriae SpaH-type_pili_diphtheriae SpaH-type pili minor subunit SpaG Surface-anchored pilus proteins ADHESIN_Corynebacterium - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 ADHESIN ADHESIN sapA Surface-anchored pilus proteins sapA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SapADE_diphtheriae SapADE_diphtheriae Surface-anchored pilus proteins sapA sapD Surface-anchored pilus proteins sapD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 ADHESIN ADHESIN SapADE_diphtheriae SapADE_diphtheriae Surface-anchored pilus proteins sapD -- GitLab