diff --git a/data/resistance/update_database_resistance.sh b/data/resistance/update_database_resistance.sh index 8d727dc098d3de9226527aa9b9658381522e4860..d767ff217f0aa07f7de62c2a0ed850df6c318dc2 100644 --- a/data/resistance/update_database_resistance.sh +++ b/data/resistance/update_database_resistance.sh @@ -3,7 +3,7 @@ PATH_DB=$(dirname "$0") DATE=$(date "+%Y-%m-%d") ## Update Antimicrobial_resistance/AMRFinderPlus -wget --quiet --recursive --no-host-directories --cut-dirs=6 ftp://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinderPlus/database/latest/ -P $PATH_DB/$DATE +wget --quiet --recursive --no-host-directories --cut-dirs=6 https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinderPlus/database/latest/ -P $PATH_DB/$DATE version_DB=$(cat $PATH_DB/$DATE/version.txt) echo "Looking up databases at https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinderPlus/database/"