diff --git a/data/resistance/Corynebacterium_diphtheriae/AMRProt_Cd b/data/resistance/Corynebacterium_diphtheriae/AMRProt_Cd index 0c80f079d218e42dc544f29ce317bd95e72e3c8f..1423e0096fd73eb6d749b390bee3ee9ae8740f18 100644 --- a/data/resistance/Corynebacterium_diphtheriae/AMRProt_Cd +++ b/data/resistance/Corynebacterium_diphtheriae/AMRProt_Cd @@ -116,13 +116,6 @@ DAMYEYMAQSCAGNRVRRSVGSSLSCINLDWDAIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTAL ANYASWAVNVAQVVDSKTADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELVDLGFAAYNFVESIINLFQVVHNSY NRPAYSPGHKTQPFVHGGYAASWNTVEDSIIKTGFQGESGHDIKITAENTPLPIAGVLLPTIPGKLDVNKSKTHISVNGRKIRMRCRAIDDATTFCRPKT PVYVGNGVHANLHVAFHRSSSEKIHSDETPLSSIDVLGYQKTVDHTKVNSKLSLFAEVKS* ->489946959|WP_003850266.1|1|1|tox_diphtheriae|tox_diphtheriae||1|TOXIN|TOXIN|Corynebacterium_diphtheriae_diphtheria_toxin_precursor_tox -MSRKLFASILIGALLGIGAPPSAHAGADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDNENPLSG -KAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINFETRGKRGQ -DAMYEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAG -ANYAAWAVNVAQVIDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELVDIGFAAYNFVESIINLFQVVHNSY -NRPAYSPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAENTPLPIAGVLLPTIPGKLDVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKS -PVYVGNGVHANLHVAFHRSSSEKIHSNEISSDSIGVLGYQKTVDHTKVNSKLSLFFEIKS* >1196085886|ARS60925.1|1|1|dtxR_pseudotuberculosis|dtxR_pseudotuberculosis||1|METAL_ION-REGULATED|REGULATOR|Corynebacterium_pseudotuberculosis_diphtheria_toxin_repressor_DtxR MKDLVDTTEMYLRTIYELEEEGVTPLRARIAERLDQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRALATAVMRKHRLAERLLTDIIGLDIHKVHDE ACRWEHVMSDEVERRLVDVLEDVTRSPFGNPIPGLDELGVSIKKKEGPGKRAVDVARATPRDVKIVQINEILQVDSDQFQALIDAGIRIGTTVTLSDVDG @@ -227,15 +220,6 @@ THVDGKEAQYSVREDKVEGFKTDYTSFGDAFTVVNKAEPTFLEVTKKWEDVTGDLPQEVTVHVVQTVDGKQTDYGDPLKL PVTYSVREDAVDGYTSKVSGEGPEFTVTNRPDTPPTPLTTGVSVDKQWLDADGNVLDADAAATMPEVTVHVVQTVDGKSVDYGDPIALNADNNWSAEVDG LPASVDGKEATYSVREDAVDGYTSKVSGEGPEFTVTNRPDTPPSTPPSTPPSTPPSTPPSTPPSTPPTTTSSTPVPPTPSQSGRGGGLALTGSSVLPVLA LGALLTALGSTLVAMMRRRS* ->499236831|WP_010934371.1|1|1|DIP0543|DIP0543||1|VIRULENCE/ADHERENCE|VIRULENCE/ADHERENCE|Putative_exo-sialidase_NanH -MHSSNRTYSRAILGLSAALTLSFTSLVAPVNAEELETVVPAIAEQEGEAPATLPSAETGLFDAAPPKPVARGAAGDLQLPAVNEEEVFEEGRVIRPPDEN -GKRCYRIPALITAKDGSLLLAFDDRYGPDEKSKTWCRDAPYDPGKSSATIKQTDIALYRSVNDGKSFENYGFIAQGTKDSRGLSYTDPALVVDRSSGKIF -AFFVRGYDKRVAQAVSGYHSGNVEGPITNRNVQDTIVIESEDNGRTWKNMKLISNLTDKVVVGGKTYTGRGRFVTSGSGVQLKFGLHAGRLIVPIAVDID -PSDSAKFVNLAIYSDDGGDTWEIGEGVAGVGYVSGDENKIIELSDGRLMMNSKEFKGGMRWSSYSEDQGKTWSDPVDHLIAPPDHPNMYNAGINVGLIKA -YPNAVKGSAASKVLLFSAPINRRNGSDYGVDGRENGWVMGSCDDGKTWSFGRQVEKNRFQYSSMTVMSDGSIGMVYESGTREEGMNLKFAKFNMAWLGAD -CLSNEALGLTGDIDKEIVAAQEKAAAATKEAQEAAEKVEKLTEELAAARKENDELKTQVKESEEAVGDLADKVFKLENAVTEAKKKATVAEKAVSDALAK -LQEAESIAEEQKAKAESAAAEAQALREKLEKLEGSILTAKENSEAEESADLSSTARDAADTARRAATDANGALSGQKQNEEKPAMGLMGILKVLAGIIPL -VAIIATIFQTFRLPFNIPGMR* >0|CAE50071.1|1|1|DIP1546|DIP1546||2|VIRULENCE/ADHESIN|VIRULENCE/ADHESIN|Conserved_hypothetical_protein MYRVFECFDELIDILEKSTGVPMTSNCMVPRHHMLALIDEARNALPNEIDDAQDVIDQQDEILRGAQERARTTIDEANEEARRTVTQSREEADALVADAE EHAERVVRQAQDEADRLVDGARREADDTVNRAQAEAERLIASGNDQYQRSVDDGLAEQQRLVSEAEVVRRANEEAHRVVDAAHADSNRLRKECDTFVENK @@ -244,109 +228,6 @@ LADLEESLSSTLRTISRDRAALRRGAGASGGGNHSQS* MNIRSTKIVAALVAMALCTPNIAFAQETSNLTTISGSTDVNGDFSLTRSISAINRNDSTPPDSKTIYVNPGDTIHVQLDLKGKKANRTHGFTSFKEVVSP IQAFSASSGSLKYKKTSDPTLFAKQLDDIAPDTFKQTGDQTIEFKGNSPLGFGVTGNHVTIDYSYTAGNELGEYTTQFLPASEIDKERFNANDLSTLDLK VVIEEPKEPSLGKILGWLGGVLGILAVVGGGLWHLLRNLIRI* ->499237964|WP_010935504.1|1|1|spaA|spaA||1|SpaA-type_pili|SpaA-type_pili|SpaA-type_pili_major_subunit_SpaA -MTARGCRLATLATTLTFFVSNVTLASVFAEESQYHAVQLGESPLSVDGLSIPERTSIAVHALMGLPTGQPANGTKLDSIGLPKVDGMSFTLYRVNEIDLT -TQAGWDAASKIKLEELYTNGHPTDKVTKVATKKTEGGVAKFDNLTPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALSEPVKT -AVDPDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVADKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAGATLQSLDQHKDQ -ELVVEFEAPVTKQPENGQLDNQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDG -KQEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNVLVEQKVKIDNKKKNAGFELPLTGGSGRI -AITIGIVGLLVALASYVLSRRKDNR* ->0|WP_010935503.1|1|1|srtA|srtA||1|SpaA-type_pili|SpaA-type_pili|Fimbrial_associated_sortase_srtA -MRHRAGEHRNVFAILAFVIAIVSVGFLLYPVAATAWNNARQARVAQSYENSYEVDSPAVRDSVLEAARQYNTSVVGFPILDPWLNRASKNSGPYLDYLQQ -LNPQRAERPVIASISIPTIDAHLPIYHGTDTATLEHGLGHLYGSALPVGGTGTHPVITGHSGLANATLFDNLEDVKEHDPIYITVQGETLKYEVDAINVV -LPEDTKLLAPDPNKDQITLITCTPYAVNSHRLLVRAHRVDLDPNDPNLTQTGTKIWQPWMLWTAALALTAIAIIITLVLRRKRTTTHEK* ->0|WP_010935502.1|1|1|spaB|spaB||1|SpaA-type_pili|SpaA-type_pili|SpaA-type_pili_major_subunit_SpaB -MKNNAINATVLSLALLTGTTPAHAQEANTLVIDLEPPAAFADDQPQGHNIDVTVAKLHNIDPEDHERIRALQRNGVPSTISEEQPHTARTDATGTATITN -LPPGTYVIRDTNTTKPRFSPLVIPLGIDTTSPTMTLRPKLIDATPGAPNVPSVPSPPSVTSPAPKKTPPRLAFTGASILGLLAIATISTLIGIALLRTRR -AEKKG* ->0|WP_010935501.1|1|1|spaC|spaC||1|spaA-type_pili|spaA-type_pili|SpaA-type_pili_major_subunit_SpaC -MSNLRTIKKRASIPAALVAILAMVMSIVLVPLIAAPSANAEPLPKKEFETCGGSVAISFDLSNSLSASDVEKSKQAALELVKSLKGSPYRFGIYTFASHS -PAAGNKNFTPVSLANDDGYNKVVAAINDIQMPAIRENKKGSPNGGTNWEGGLQAIANDIDRGIKYDAVYFITDGQPTWDNNGRNWLGTTTEVVELENAVT -QAKLISDKGAKLIPVGIGQLSDDKPFDLYKPILPSEDDYYWSRYPWKIDRSLTGKQMLEKITSPGLEPIILPDYSTLPQRMGQQIFTGCFQIAKNIIDAD -GNVIENPAGWNFDITAAGVQGIPPSIETDKNGQDTFAMKSINKESFKITITERPTGDQKQNFRFKNARCQRYSYGQAPTDIPIKTSDTSITLTADTKSLI -SCGFNNLPVVPVSVSKKVNVNTPQLLEELNNQTFDFTYSCEKGANEKEIKGEIKGVHNGESKEIGKVAVGTQCEIKEVTPKVDDSRMKLSTTWSSENTTA -DANQDNGTYRFKADTDAFKNKKTVLATAENNYEAQTATIKLTKTIINRDKIPATKLPEKFPVTYTCRYVPHPNARPEHGGLPETNPYFVDSKTVVVPRDG -SIEIGPFPVGTQCSFEETARLDPNVQADAKIPGFSLKTEWNSNICFGNTIDNNSQDCSTNSVWIPKPGQYSLNVENTYTRELASVEIEKTVSGDASDLTN -SHEFSFNLRCEDSGVEVYSQDNIVVKKDGRQVIENIPVDANCTLSEKQPEQKGVDFVVPAPFHLRASTAGDIVKVVVDNTAKRQVAPISIQKKVHKKDTF -SPEISASIDALTYSVVAECTVPGVETPRKVLKTVSDNQTVEFGNFPVGTTCSFSELTEAPAGTEMSYKFADGPEVTIEDSTPINKVLTNTFENARGELKV -TKKVLDGDMPQALVDQIPSSFTVNVACSITGNHSITLQKDEQKAVPGVVAGESCTLSEEVTPITGATHHKHWIKGELLEVADSTDITINPNGSNAIRLEN -HYETDAVSLELTKRVRVIDQVGNDVNSELKNAVVRPEQPFLFRYRCEINGQVVAENTLSADAINTGATKVPRGSICTVEEDSSSVELSNATLSHVEFFVH -GTKTNDKASVAINSDHNRLDATNTFTLKTGSFNLKKKVDGEGVSTIHEDRRFEISYRCTLGDWKKNGTITLGRFDSAESHSVKDIPVGASCEIIEDSEKA -QEPNAQVTARWTHTDSTNGWGDTEAACENHAACEVDPKNEFATTVVIAGNEKENFQGTFIVWNTYTYDKTKVEINKVLTNDGPELAGKDNFAFTLKCTDP -RFAGSDLADKHSIPDPTITVALNAKGQSRASYQVADERHDSVEVPVGYNCTVTENPIALYDAKATTQFSGPAVVENTAVQRTSSNSASARFVTEKQENNG -TQKIQVTNDYIRPRADVMVHKTIAKPEHSVDPWLLNTTYSITYKCDDPYIKDRSYSNDVDIQADAEKPTPIFADPTAHVKIPASAVCTFSENTEGHLPGE -VKGVVDETNKVAEFAGEHEKRSYFTPEIKDVVLSESEPTRIEFTNSYVMPQRILSLQKYVEGDPGHAVIAPEETFEFSYTCTMPHLFPNQPNPMSQEVGN -KVARGVIKIREGETWRSPEVPIGTSCTIKEEDDPALRTKLENNALRMVPTYLFPTERAGAASAPVIPPLTDRPIYNGTEPRLQMPESGIELNDAHSHTVV -INNVYTTDAEINIAKVNADNSPLPGAHFAIYGIGENGQRKELPEVADAPAKSAKSVEQALFAVRLRPGSYELVETQAPQGGQLLPKPWRFDVKAANAGAI -GDLEVTLDNYDADSGLITVEHPQGKPWLIKVANVSASTLPLTGSNGYLRWLLAGAAGLLVAAALWLVARRKR* ->0|WP_010934132.1|1|1|spaD|spaD||1|SpaD-type_pili|SpaD-type_pili|SpaD-type pili minor subunit SpaD -MKKNSLTIRSVTFAAVAGLSLGISAPGAVAIAEEGTQVQQTQRANIDFERKGSLTLHKKKGAESEKRATGKEMDDVAGEPLNGVTFKITKLNFDLQNGDW -AKFPKTAADAKGHETSTTKEVETSGNGTAVFDNLDLGIYLVEETKAPDGIVTGAPFIVSIPMVNEASDAWNYNVVAYPKNTETKTEKTVKDADQNIQDAY -TYTIKADAPTWGKDKKLTAFRFEDELDKRLDFQKVTEVKAGDTVLGTSDYTVNDPATDGNKLVVTLTDEGLKKVKSGDKMSLTFEVKRKEVGNTTELKNR -ADVIFNNPNTDKEVKNKTNEVVTYHGKLKVVKKDGKEAGKVLKGAEFELYQCTSAAVLGKGPLTVDGVKKWTTGDDGTFTIDGLHVTDFEDGKEAAPATK -KFCLKETKAPAGYALPDPNVTEIEFTRAKISEKDKFEGDDEVTLVSEIKNIKQGTPKLPMTGGAGVGILAAIGAAIVAAGAWFARRGAKN* ->0|WP_010934134.1|1|1|spaE|spaE||1|SpaD-type_pili|SpaD-type_pili|SpaD-type pili minor subunit SpaE -MTSHARAVRTSRRLVAAIALSAGLLGGAYGAVGVADAAKVAGLSDQPGVSRDYGTDTLSITLSPGNGDPVNPATGKVAGVTIKLQRLQGIDPENAADQAK -VRNTSADKIAGWPTDRTIKAVTNEAGQVRFQGLEKGIYLVTSQAPAGAAAGEYREISPFLVAVPFHTVADNPRPVEGVIVAKTNSTVPPTTPPWTPPTTP -STPPPGHTPPLRETPGSGDEKEREQGDLALTGVQIIGLVLAAVALMGAGLLMLLITKKRKQEG* ->0|WP_010934135.1|1|1|spaF|spaF||1|SpaD-type_pili|SpaD-type_pili|SpaD-type_pili_minor_subunit_SpaF -MKTKFMGVAAALTAALALVFGVAAPGALPSLPVATAQAQDRSFTVTSQQRYEQKGTRFIPNYKIPADQLSGGTITLGAGTVVTLESSIRFYLAPNDADFT -VYYTGTDGNWYETKATYKKVSVKKYEVTLPEITIGGAAEIEFKGVHRGPPNTVISAKFDVVGGTTQPEPEPDPAPEPQPAPEPEPGTSVNPAAPTAVDPA -TAPSCVEKGYINIPDTKGVDYFIGGELKHAGQHFYEGQKASVKVTAKPQNGYQFAAGAKTEWSFDFSGEVKDCSDSSEDPKPAAVEGRHFDAIGHEFAVE -ADPVDPTKPNAFTAKVTAESHMKYATVRIETDATFLDPQKYNLTLDQIEPGVTLQKRNVNIGNGFITMDVVPVKDGKPVDSAVVPKDAVFTFTNNLSENK -NLKIALDVYGANKSTPKPPDIISPPDGAQWVHGRVPNPPMPKRCGLRIAVVADLSTSLKYADSNGFDESKKAANALIDSLAGTPAELGIYNFAGGAPRNP -AGSTYGQNPPYISLQSDDGVSRAKSIVSNWNGNGSTNWEAGLKQVAAGNYDVVYFITDGMPTYSSKAPQLGLGGEFVQESALNQAIDAANELKAAGTRVV -PIMVDLTVGGKNAQHTTVTQDLVLKNVRFWKRGTSNSEPGLYFQFTNKYVDAASYVGDDTTANFEIAYKNGGFKVWERTSRGRNIDVTRDQSKWTYGPRE -VKTMGEDISGTGDTIRVEQYSQLAAQMKKIGEELALRCNGVVKVKKRIVDENGRAIEDGVPGWEFTLSAGGQDIIDPGNGDRVRKSLKATSSANEDRGTA -SWNIMSEQEQQLTLVETQQPGFNLYKRNDKNAVCTETRDGVMKPIEVTNDGEFGFKVKMRAKDKKLSSVSCVVDNYKQPETPPGKLTFKKAQYNGDKIEE -IPGLGGATFEIYPSKGDQPDYSAEALYTIKPGQESIEVKTTGTFFLVETKAPKGLNLLAQPVKFEISVDETTKKYKISVGSTSSGQVQAKGEGDKMILTV -ADTTAGELPKTGGYGVGLVGLIGVALAGAGFLLGRRKTA* ->0|WP_010935677.1|1|1|spaI|spaI||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minorsubunit_SpaI -MKKTHLFRIPAATTAAVALLLASGPIASADSRTITGATDGLNISDIRCDTGSLTLIKRPPAAFEGVDKADLPAGTIDGATFTLRRIEGIDLTKQAGWDAA -KALTIQEARSRLSDEVWKAVSGRDGRAVVTGLPMGVYLVSETPPAKRPAEYRRTLDFLITVPAGMRTADGNVASWSCDVQVFTKDTDDLPPTVPVFPPVE -SSVTLTPSSPVPGTPKTPGKPDLPEKFRKEVTDRLGNTGANVLGIAALGIALAIAGFLVQRRKKNEENG* ->0|WP_010935680.1|1|1|spaH|spaH||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minor_subunit_SpaH -MSVKRTTIGRRLACAVGASALILSGAGFAAPALAQTEPSANVAAANYGNIDFTKQGRIIINKHLHQEDGSSAVGDPATGDYKGTPTEGLNGVTFKIYKIK -NIDLSKQEGWEAVNKYNIPADPTKDDNLKEVDTVTTANGGKATTKDLSVAAYVVYETDAPADVIDRASPFVVTLPYPDTTANDDRLGERTNTWLYDVNVF -PKNGKTKLNKTVEMQNTYGLNVGSEVHFPVTAVIPKVAEDKVFKYFQVIDPMDPRFDQESLGVESVTLNGKALESDDYTVAGDGSRVIVSLTSQGLGKLK -NAAGQELKVVFKGKLKSLDNGKPEEFGRILNQAYVYSDTESNPGQSTPPSTPPIWPVTTPPDTPPVTTTPPGGTPLVKQFWGDLRILKVDKGDGKTGLEG -AKFKIYPATKPYPENGTCGPEYDKNAPVQVNGTGNGNDLVVTSDKNGNVHFEGLFVSDDQNDPGKSAAQRCYVLVETEAPTGFVTPKDGTVFPVAVKIGQ -TATTTYDAKVENVKRDTPDLPLTGGKGVLFLMIAGGLLLLVAVGAGFVFVRRINE* ->0|WP_010935681.1|1|1|spaG|spaG||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minor_subunit_SpaG -MTAWSLKGRNDFLQRLAALAAVPIVAVSLMAGSVSAAAQDEVGLDAALADSDSPPLEPKPQDLESVEGEEEAPAPEELESIAGTFATAAAMGTTTGSGNL -KCDEGYYYAIHKWGEVLQLQEQNGAWGRNPINRQSYSFRSGSSPSGDWNGLGVSKDGSTVYAYNRYRYENSSTYGWVVTQVQIGDIVNGQRNVSNVYRLE -TPSGLIAGAVAPDGTYYFGGYRFSGDVKAAKKAVYTNNPPVTNWTYSYDSSLGYYYYNGTDGRRYYYSSAGFWSNSGEFLGRYWSPAVAERSREFVLYKY -SGGQITTVGIVPISTPVQNSTSAVNGDFAFDSSGNMYLLFHEGGTTNVQLIPVLADQLEGTGTTRQIIPQPTTTIQVKPNDLGPSYFNGVSFTVDGYLMI -EDGTVNARQSTAYFYKVDPTTGNVVAQETFNNDGTHEVYMDRDGGYAAWLYGGQSDLASCATFSTLELKKTFPTGRAAKADQVELQISRGTGTNTNEKLA -WTSTTGEVIGEQPVVAGPVIASPDEVFRLREVPSVSEGTGKTRLSYYKSNLTCKDTLTGAFLPSTYIKSVDNTSSTKREWDVTIPSYSAWQLQCMYENTP -VKGDLAWTKVGKESPEDTSVIELGGSVWSLLDSNKQVITSPISYEKIKDCDANTDAGCLKVDKNKSSAKFLVTDLPYGTYYLREDQAPDGYKPLSDPIKF -SFDVKGMTILESPAELDQRWKELAKKNTDTNVVDLGQILNLKPQGTVTWKKTDAATGAILHDSTWKLTRLTDASGQKIAAEALVDGRDQFEIKDKTSKTE -DATRDTNEATGEFKVEDLPYGKWRLEEVEAPDGYRIVGANAYEFTVNKAKKDVEAVPGGAIKNYKARIEWSKVDAADEKNALAGSEWQLTGPDGKELSVK -DCVASECVPEVNDIDPGKGKFSVAELGNGEYTLKETKAPEGYLVTEKTYTFKITDTGYSIDGNTEKKFPVPSSGTNYIPLSIGGITNDKDAAKVHWSKVD -AAATSTLLGGSEWSIVPKTSTGALDEVNAIKVTDLVAGARAEKDTNTAAGEFTVELPLGTYVLKETKAPAGYLVSDEAKNGKEFTLTRDNLTKVLEFGSV -TNKKIEAGVTWKKVDATDATKLLGGSEWTITPYKADGTLDTANAKKVVDKTPNAAGVLDEDPVAGQFKINALPAGKYRLEETKAPEGYVLADAASAGVDF -TVDDSKAGAVVDLDAIKNERMDGVVTWTKLDQSGKALHSSEWTIVKVTADRKPIDGAVAIQVTDCQADAASKCTEPDIDPAGGAFKVDGLEFGEYKLVES -KAPAGFVVDTTEHYFTISKNGEEIVAGAFKNELGKGVKLPLTGGLGAFKFLIAGGLLGVLSAAMGGAHVMRRRNS* ->0|WP_010934130.1|1|1|srtB|srtB||1|SpaD-type_pili|SpaD-type_pili|Fimbrial_associated_sortase_srtB -MTDQPPTPNTADATPPRQDKKLNTNAIIAVVLILAGLGVLLYPVLATQWNNYQQSRAAEAYSQLEKGVPPEVLNKAWEEAQQYNANLGDIDPGDAWTSSD -DESSSAYQRYLNYLSALNETEAMGRIVLPSIKSDLPIFHGTSDRVLARGVGHLYGTDLPVGAPGELGEDGVIPPAPPEGRLSALSAHTGLQNATLWDNLI -QIKKGDPVYVAAAGEKLKYEVRNIEVVTPDKTSLLRRTSNKDQVTLITCTPYGINTHRLIITAERVPMDPQGESAFDGQGTTWQWWMWAILAAAAIIVLL -LIRWWWKNFRKQEGEEGPTTSGAGGTTES* ->0|WP_010934133.1|1|1|srtC|srtC||1|SpaD-type_pili|SpaD-type_pili|Fimbrial_associated_sortase_srtC -MDHTLSTDVEPEKEPRRANSAKTSPVLAAVLVILGVLVMLYPVTSTLWNNHLATKAAQEYAKLEKNAPQEVKNTQWERAHEYNENRTTGPIFDPWLARFD -ENNSDYQEYLDQLDANDAMARLIFPKIKADLPIFHGTDNDTLQKGLGHLFGSDLPVGGKGMHSVITGHTGLANSTMFDHLNKAEKGDTFYVQVSGEKLKY -VVDQIKVVLPTETEDLRPEQGKDYITLITCTPYGINTHRLMVRGHQVPLAPEDHEVFDKNHGAGWQWWMYTLLAAAAVVLLLLLRWLLKNKRDGESQETT -EMMNDEGAGADD* ->0|WP_010935678.1|1|1|srtE|srtE||1|SpaH-type_pili|SpaH-type_pili|Fimbrial_associated_sortase_srtE -MAMNSETAGKEPNVVSTDAKHSTGTSSNAGTGESSAKKKAQTAIAAIVMLLCGLLGLVILFYPVVSTQLNNYEQSKLARQFGADAAQADPAVVAAALDAA -HAYNDSLENGPLQDPWTGGDSTKDPAYQAYEKLLGEYPAMAQISIPAISVNLPIYHGTSDATLLKGVGHLYGTALPVGGLGTRSVLTAHSGIQKSTFFDN -LEKVKKGDAIYVRNIGETLKYQVRDIEIIRPAEIDRIQPIPDRDLITLVTCTPYGINTHRLLVTAERVPMEPGEADRAFAGDGIVWQWWMKLAIGVLVVI -LLLTGWLIIRILRARKFAKKTAGADAAKSVEPGDIEASLSASAAEESQ* ->0|WP_010935679.1|1|1|srtD|srtD||1|SpaH-type_pili|SpaH-type_pili|Fimbrial_associated_sortase_srtD -MVTTASPRSTGPDNPDAQPKRRWVFSGLALFACITALAGLMLGLYPSTAAWFNAREQAKLVDLYDSKIENATPLSAEQLLELAHRYNDRLTVGAALDPWA -NVPRGAGKEDGDGMAYKDQLRVDRTDVMARIRIPSIKVDLPIYHGTSDNTLKKGAGHLEGTSLPVGGPRTHSVITAHRGLAEATMFTNLNKVGVGDRFTI -EVMGEVLTYEVRETRVVSPEDTRFLQTQDDRDLVTLVTCTPLGINTHRILVTAERITPTPQSDIDAARQASQIGFPWWAVIFAVGFSFIALFFWRSGYMI -PPKKKEEDIESEADGDEL* >0|WP_010935545.1|1|1|sapA|sapA||1|SapADE|SapADE|Surface-anchored_pilus_proteins_sapA MKFGFTKHRSWLSHAALPAVLFLAITSTAITTPVDATPITSTNIDTVVEDAAENPPLDQESAALPTEVTDDNLQHVKLIITNNMISAGFATIERKNGESE FYGHDQVLIDGTEVSDSSVYSAPATENQGDLITINFAGLSIQSGQTISFSYRSSATSQNDTWLPSEANAFKYLAAPAESAIANTDEREAQSFLQGNFELS diff --git a/data/resistance/download_sequence_prot.sh b/data/resistance/download_sequence_prot.sh index 4fb03ef436900e8b9fc84cca9d27335a1e1c53aa..c2cb15de26043448ba570a5a7c0849d5e5ff0293 100644 --- a/data/resistance/download_sequence_prot.sh +++ b/data/resistance/download_sequence_prot.sh @@ -13,7 +13,7 @@ esearch -db protein -query WP_010934342.1| efetch -format fasta | sed '1d' | sed esearch -db protein -query WP_004566793.1| efetch -format fasta | sed '1d' | sed '1i >490703392|WP_004566793.1|1|1|narK|narK||2|narIJHGK|narIJHGK|Corynebacterium_diphtheriae_MFS_transporter_narK' >> AMRProt_Cd esearch -db protein -query WP_014654963.1| efetch -format fasta | sed '1d' | sed '1i >504467861|WP_014654963.1|1|1|tox_pseudotuberculosis|tox_pseudotuberculosis||2|TOXIN|TOXIN|Corynebacterium_pseudotuberculosis_diphtheria_toxin_precursor_tox' >> AMRProt_Cd esearch -db protein -query WP_014835773.1| efetch -format fasta | sed '1d' | sed '1i >504648671|WP_014835773.1|1|1|tox_ulcerans|tox_ulcerans||2|TOXIN|TOXIN|Corynebacterium_ulcerans_diphtheria_toxin_precursor_tox' >> AMRProt_Cd -esearch -db protein -query WP_003850266.1| efetch -format fasta | sed '1d' | sed '1i >489946959|WP_003850266.1|1|1|tox_diphtheriae|tox_diphtheriae||1|TOXIN|TOXIN|Corynebacterium_diphtheriae_diphtheria_toxin_precursor_tox' >> AMRProt_Cd +#esearch -db protein -query WP_003850266.1| efetch -format fasta | sed '1d' | sed '1i >489946959|WP_003850266.1|1|1|tox_diphtheriae|tox_diphtheriae||1|TOXIN|TOXIN|Corynebacterium_diphtheriae_diphtheria_toxin_precursor_tox' >> AMRProt_Cd esearch -db protein -query ARS60925.1| efetch -format fasta | sed '1d' | sed '1i >1196085886|ARS60925.1|1|1|dtxR_pseudotuberculosis|dtxR_pseudotuberculosis||1|METAL_ION-REGULATED|REGULATOR|Corynebacterium_pseudotuberculosis_diphtheria_toxin_repressor_DtxR' >> AMRProt_Cd esearch -db protein -query BAM27641.1| efetch -format fasta | sed '1d' | sed '1i >393403149|BAM27641.1|1|1|dtxR_ulcerans|dtxR_ulcerans||2|METAL_ION-REGULATED|REGULATOR|Corynebacterium_ulcerans_diphtheria_toxin_repressor_DtxR' >> AMRProt_Cd esearch -db protein -query CAE49945.1| efetch -format fasta | sed '1d' | sed '1i >38200261|CAE49945.1|1|1|dtxR_diphtheriae|dtxR_diphtheriae||2|METAL_ION-REGULATED|REGULATOR|Corynebacterium_diphtheriae_diphtheria_toxin_repressor_DtxR' >> AMRProt_Cd @@ -30,23 +30,23 @@ esearch -db protein -query WP_080669054.1| efetch -format fasta | sed '1d' | sed esearch -db protein -query AEG82501.1| efetch -format fasta | sed '1d' | sed '1i >334697704|AEG82501.1|1|1|cpp|cpp||1|VIRULENCE/ADHERENCE|VIRULENCE/ADHERENCE|Endoglycosidase_of_the_EndoE_family' >> AMRProt_Cd esearch -db protein -query WP_010935564.1| efetch -format fasta | sed '1d' | sed '1i >499238024|WP_010935564.1|1|1|DIP2093|DIP2093||1|VIRULENCE/ADHERENCE|VIRULENCE/ADHERENCE|Csh_family_fibrillar_adhesin-related_protein' >> AMRProt_Cd esearch -db protein -query WP_158306310.1| efetch -format fasta | sed '1d' | sed '1i >1789759809|WP_158306310.1|1|1|cbpA|cbpA||1|VIRULENCE/ADHERENCE|VIRULENCE/ADHERENCE|Cna_B-type_domain-containing_protein' >> AMRProt_Cd -esearch -db protein -query WP_010934371.1| efetch -format fasta | sed '1d' | sed '1i >499236831|WP_010934371.1|1|1|DIP0543|DIP0543||1|VIRULENCE/ADHERENCE|VIRULENCE/ADHERENCE|Putative_exo-sialidase_NanH' >> AMRProt_Cd +#esearch -db protein -query WP_010934371.1| efetch -format fasta | sed '1d' | sed '1i >499236831|WP_010934371.1|1|1|DIP0543|DIP0543||1|VIRULENCE/ADHERENCE|VIRULENCE/ADHERENCE|Putative_exo-sialidase_NanH' >> AMRProt_Cd esearch -db protein -query CAE50071.1| efetch -format fasta | sed '1d' | sed '1i >0|CAE50071.1|1|1|DIP1546|DIP1546||2|VIRULENCE/ADHESIN|VIRULENCE/ADHESIN|Conserved_hypothetical_protein' >> AMRProt_Cd esearch -db protein -query CAE50545.1| efetch -format fasta | sed '1d' | sed '1i >0|CAE50545.1|1|1|DIP2014|DIP2014||2|VIRULENCE/ADHESIN|VIRULENCE/ADHESIN|Putative_membrane-anchored_protein' >> AMRProt_Cd -esearch -db protein -query WP_010935504.1| efetch -format fasta | sed '1d' | sed '1i >499237964|WP_010935504.1|1|1|spaA|spaA||1|SpaA-type_pili|SpaA-type_pili|SpaA-type_pili_major_subunit_SpaA' >> AMRProt_Cd -esearch -db protein -query WP_010935503.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935503.1|1|1|srtA|srtA||1|SpaA-type_pili|SpaA-type_pili|Fimbrial_associated_sortase_srtA' >> AMRProt_Cd -esearch -db protein -query WP_010935502.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935502.1|1|1|spaB|spaB||1|SpaA-type_pili|SpaA-type_pili|SpaA-type_pili_major_subunit_SpaB' >> AMRProt_Cd -esearch -db protein -query WP_010935501.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935501.1|1|1|spaC|spaC||1|spaA-type_pili|spaA-type_pili|SpaA-type_pili_major_subunit_SpaC' >> AMRProt_Cd -esearch -db protein -query WP_010934132.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934132.1|1|1|spaD|spaD||1|SpaD-type_pili|SpaD-type_pili|SpaD-type pili minor subunit SpaD' >> AMRProt_Cd -esearch -db protein -query WP_010934134.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934134.1|1|1|spaE|spaE||1|SpaD-type_pili|SpaD-type_pili|SpaD-type pili minor subunit SpaE' >> AMRProt_Cd -esearch -db protein -query WP_010934135.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934135.1|1|1|spaF|spaF||1|SpaD-type_pili|SpaD-type_pili|SpaD-type_pili_minor_subunit_SpaF' >> AMRProt_Cd -esearch -db protein -query WP_010935677.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935677.1|1|1|spaI|spaI||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minorsubunit_SpaI' >> AMRProt_Cd -esearch -db protein -query WP_010935680.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935680.1|1|1|spaH|spaH||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minor_subunit_SpaH' >> AMRProt_Cd -esearch -db protein -query WP_010935681.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935681.1|1|1|spaG|spaG||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minor_subunit_SpaG' >> AMRProt_Cd -esearch -db protein -query WP_010934130.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934130.1|1|1|srtB|srtB||1|SpaD-type_pili|SpaD-type_pili|Fimbrial_associated_sortase_srtB' >> AMRProt_Cd -esearch -db protein -query WP_010934133.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934133.1|1|1|srtC|srtC||1|SpaD-type_pili|SpaD-type_pili|Fimbrial_associated_sortase_srtC' >> AMRProt_Cd -esearch -db protein -query WP_010935678.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935678.1|1|1|srtE|srtE||1|SpaH-type_pili|SpaH-type_pili|Fimbrial_associated_sortase_srtE' >> AMRProt_Cd -esearch -db protein -query WP_010935679.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935679.1|1|1|srtD|srtD||1|SpaH-type_pili|SpaH-type_pili|Fimbrial_associated_sortase_srtD' >> AMRProt_Cd +#esearch -db protein -query WP_010935504.1| efetch -format fasta | sed '1d' | sed '1i >499237964|WP_010935504.1|1|1|spaA|spaA||1|SpaA-type_pili|SpaA-type_pili|SpaA-type_pili_major_subunit_SpaA' >> AMRProt_Cd +#esearch -db protein -query WP_010935503.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935503.1|1|1|srtA|srtA||1|SpaA-type_pili|SpaA-type_pili|Fimbrial_associated_sortase_srtA' >> AMRProt_Cd +#esearch -db protein -query WP_010935502.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935502.1|1|1|spaB|spaB||1|SpaA-type_pili|SpaA-type_pili|SpaA-type_pili_major_subunit_SpaB' >> AMRProt_Cd +#esearch -db protein -query WP_010935501.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935501.1|1|1|spaC|spaC||1|spaA-type_pili|spaA-type_pili|SpaA-type_pili_major_subunit_SpaC' >> AMRProt_Cd +#esearch -db protein -query WP_010934132.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934132.1|1|1|spaD|spaD||1|SpaD-type_pili|SpaD-type_pili|SpaD-type pili minor subunit SpaD' >> AMRProt_Cd +#esearch -db protein -query WP_010934134.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934134.1|1|1|spaE|spaE||1|SpaD-type_pili|SpaD-type_pili|SpaD-type pili minor subunit SpaE' >> AMRProt_Cd +#esearch -db protein -query WP_010934135.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934135.1|1|1|spaF|spaF||1|SpaD-type_pili|SpaD-type_pili|SpaD-type_pili_minor_subunit_SpaF' >> AMRProt_Cd +#esearch -db protein -query WP_010935677.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935677.1|1|1|spaI|spaI||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minorsubunit_SpaI' >> AMRProt_Cd +#esearch -db protein -query WP_010935680.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935680.1|1|1|spaH|spaH||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minor_subunit_SpaH' >> AMRProt_Cd +#esearch -db protein -query WP_010935681.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935681.1|1|1|spaG|spaG||1|SpaH-type_pili|SpaH-type_pili|SpaH-type_pili_minor_subunit_SpaG' >> AMRProt_Cd +#esearch -db protein -query WP_010934130.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934130.1|1|1|srtB|srtB||1|SpaD-type_pili|SpaD-type_pili|Fimbrial_associated_sortase_srtB' >> AMRProt_Cd +#esearch -db protein -query WP_010934133.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934133.1|1|1|srtC|srtC||1|SpaD-type_pili|SpaD-type_pili|Fimbrial_associated_sortase_srtC' >> AMRProt_Cd +#esearch -db protein -query WP_010935678.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935678.1|1|1|srtE|srtE||1|SpaH-type_pili|SpaH-type_pili|Fimbrial_associated_sortase_srtE' >> AMRProt_Cd +#esearch -db protein -query WP_010935679.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935679.1|1|1|srtD|srtD||1|SpaH-type_pili|SpaH-type_pili|Fimbrial_associated_sortase_srtD' >> AMRProt_Cd esearch -db protein -query WP_010935545.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010935545.1|1|1|sapA|sapA||1|SapADE|SapADE|Surface-anchored_pilus_proteins_sapA' >> AMRProt_Cd esearch -db protein -query WP_010934306.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_010934306.1|1|1|sapD|sapD||1|SapADE|SapADE|Surface-anchored_pilus_proteins_sapD' >> AMRProt_Cd esearch -db protein -query WP_011272780.1| efetch -format fasta | sed '1d' | sed '1i >0|WP_011272780.1|1|1|sapE|sapE||1|SapADE|SapADE|Surface-anchored_pilus_proteins_sapE' >> AMRProt_Cd