From 991ee973e8fa53d0ef45d029cd38a8726bd180c0 Mon Sep 17 00:00:00 2001
From: mrethore <martin.rethoret-pasty@pasteur.fr>
Date: Tue, 20 Aug 2024 15:42:57 +0200
Subject: [PATCH] pandas chained assignment update
---
module/utils.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/module/utils.py b/module/utils.py
index b6123e1..d28cdb8 100644
--- a/module/utils.py
+++ b/module/utils.py
@@ -173,8 +173,8 @@ def armfinder_to_table(data_resistance:pd.DataFrame) -> pd.DataFrame:
family = data_resistance['Class'][res]
if table[family][strain] != '' :
- table[family][strain] += ";"
- table[family][strain] += gene
+ table.loc[strain, family] += ";"
+ table.loc[strain, family] += gene
return table
--
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