amrfinder not recognised by the diphtoscan
Hi mrethore,
I am trying to use your tools for my samples. But the command fails with following warning:
python diphtoscan/__main__.py -a diphtoscan/pseudogenomes/ Dependency testing /!\ Warning /!\ : amrfinder missing in path!
Please help. I have installed the AMRFINDER in the folder diphtoscan still it is not reading the path to amrfinder.
Please help me, I really want to use your tool.
Thank you.
Regards,
Javaria