Tags give the ability to mark specific points in history as being important
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2.1.0
b2d19b2f · ·- Add toxigenicity prediction to pipeline results. - Provide a local database containing toxigenic profiles published before 01/01/2025 to ensure backward compatibility. - Automatically fall back to the local toxigenic profiles database when BIGSdb returns no results.
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2.0.0
8460ad7a · ·## Breaking Changes Major reorganisation of the codebase to support packaging with setuptools. Move all Python modules under the diphtoscan package. Relocate data files inside the diphtoscan package. Update all imports to use relative imports. Add pyproject.toml to enable package building and installation. ## Added Support for building and installing the project as a Python package using setuptools. Add JolyTree as a dependency in environment.yml. Include package data during installation to ensure correct runtime behavior. Add a local fallback database for toxigenic profiles published before 01/01/2025. ## Changed Update JolyTree execution to avoid shell calls and modernize dependency resolution. Adapt code to support different key names between AMRFinderPlus version 3 and 4. Automatically fall back to the local toxigenic profiles database when BIGSdb returns no result.
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1.6.1
08fc8c70 · ·- Completion of the Class & Subclass fields in the fam.tab file following the update of the AMRfinder database. - Patch recurring error in dependency test function.
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1.6.0
f76f45ce · ·Reformatting of the Corynebacterium_diphtheriae database following their addition to the AMRfinder database.
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1.5.0
0fd5ac81 · ·- Formatting of the Coryne resistance database in amrfinder 3.12 format. - Deletion of the 2023-10-12 resist database - Adding the updated resistance database (2024-03-04)