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Mise à jour de Multi locus sequence typing (MLST) authored by Mélanie HENNART's avatar Mélanie HENNART
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Multi-locus-sequence-typing-(MLST).md
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Genomes identified by _diphtOscan_ as belonging to the _C. diphtheriae_ species complex are subjected to MLST using the 7-locus scheme described initially by Bolt et al. (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020856/) and hosted at [BIGSdb-Pasteur _C. diphtheriae_ database](https://bigsdb.pasteur.fr/diphtheria/). Note that this scheme is not specific to _C. diphtheriae_ sensu stricto but covers the whole _C. diphtheriae_ species complex, including _C. ulcerans_. Genomes identified by _diphtOscan_ as belonging to the _C. diphtheriae_ species complex are subjected to MLST using the 7-locus scheme described initially by Bolt et al. (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020856/) and hosted at [BIGSdb-Pasteur _C. diphtheriae_ database](https://bigsdb.pasteur.fr/diphtheria/). Note that this scheme is not specific to _C. diphtheriae_ sensu stricto but covers the whole _C. diphtheriae_ species complex, including _C. ulcerans_.
A copy of the MLST alleles and ST definitions is stored in the [data directory](https://gitlab.pasteur.fr/BEBP/diphtoscan/data) of this repository. The update can be executed with the `-u` option. A copy of the MLST alleles and ST definitions is stored in the [data directory](https://gitlab.pasteur.fr/BEBP/diphtoscan/-/tree/main/data/mlst) of this repository. The update can be executed with the `-u` option.
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