Others-functionalities.md

+Execution of Jolytree via by the option `--tree` (see https://gitlab.pasteur.fr/GIPhy/JolyTree)
+
+         JolyTree.sh -i $dirIn -b $dirOut -t $threads
+
+
+
+
+
+Execution of integron finder version 2 `--integron` (see https://github.com/gem-pasteur/Integron_Finder)
+
+         integron_finder --cpu $threads --outdir $dirOut --gbk --func-annot --mute $genome
+