diff --git a/README.md b/README.md index 17d70fe1306966f2c2221afba90c0a5a7e787b5e..26e33f4d1a9858a16e3f46e5db26ae859699fab0 100644 --- a/README.md +++ b/README.md @@ -28,7 +28,7 @@ Launch _InheritanceAlgorithm_ with option `-h` to read the following documentati ``` usage: InheritanceAlgorithm [-h] -i FILEINPUT -c COLUMN_CG -o FILEOUTPUT -This tool converts Genbank files into EMBL-like files for submission to ENA +This tool to attribute to each clonal group (CG), an identifier that would maximally reflect the widely adopted 7-gene ST identifier of the corresponding isolates. optional arguments: -h, --help show this help message and exit @@ -50,4 +50,7 @@ python gbk2ENA.py -i clustering.strain.txt -c Seuil43,Seuil190 -o result.txt ## References +A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains +Melanie Hennart, Julien Guglielmini, Martin C.J. Maiden, Keith A. Jolley, Alexis Criscuolo, Sylvain Brisse +bioRxiv 2021.07.26.453808; doi: https://doi.org/10.1101/2021.07.26.453808