From bd80ebcec5257967c4316ca4b02d016e293b79d5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C3=A9lanie=20=20HENNART?= <melanie.hennart@pasteur.fr> Date: Tue, 10 Aug 2021 08:30:47 +0000 Subject: [PATCH] Update README.md --- README.md | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 17d70fe..26e33f4 100644 --- a/README.md +++ b/README.md @@ -28,7 +28,7 @@ Launch _InheritanceAlgorithm_ with option `-h` to read the following documentati ``` usage: InheritanceAlgorithm [-h] -i FILEINPUT -c COLUMN_CG -o FILEOUTPUT -This tool converts Genbank files into EMBL-like files for submission to ENA +This tool to attribute to each clonal group (CG), an identifier that would maximally reflect the widely adopted 7-gene ST identifier of the corresponding isolates. optional arguments: -h, --help show this help message and exit @@ -50,4 +50,7 @@ python gbk2ENA.py -i clustering.strain.txt -c Seuil43,Seuil190 -o result.txt ## References +A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains +Melanie Hennart, Julien Guglielmini, Martin C.J. Maiden, Keith A. Jolley, Alexis Criscuolo, Sylvain Brisse +bioRxiv 2021.07.26.453808; doi: https://doi.org/10.1101/2021.07.26.453808 -- GitLab