Commit 76f295a4 authored by Alexis  CRISCUOLO's avatar Alexis CRISCUOLO
Browse files

V2.0

parent 881b1952
......@@ -83,9 +83,9 @@ Run _AlienTrimmer_ without option to read the following documentation:
-v verbose mode (default: not set)
EXAMPLES:
[SE] AlienTrimmer -i reads.fq -c aliens.fa -o trim -l 30 -p 20
[SE] AlienTrimmer -i reads.fq.gz -c aliens.txt -o trim -k 9 -q 13
[PE] AlienTrimmer -1 r1.fq -2 r2.fq -c aliens.fa -o trim -m 8 -p 25 -v
[SE] AlienTrimmer -i reads.fq -a aliens.fa -o trim -l 30 -p 20
[SE] AlienTrimmer -i reads.fq.gz -a aliens.txt -o trim -k 9 -q 13
[PE] AlienTrimmer -1 r1.fq -2 r2.fq -a aliens.fa -o trim -m 8 -p 25 -v
[PE] AlienTrimmer -1 r2.fq.gz -2 r2.fq.gz --a1 fwd.fa --a2 rev.fa -o trim -z
```
......
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