From ae8ab6dc78be9751a7bf182590c0391c35e17281 Mon Sep 17 00:00:00 2001 From: Alexis CRISCUOLO <alexis.criscuolo@pasteur.fr> Date: Thu, 15 Jun 2023 08:48:06 +0200 Subject: [PATCH] 2.0 --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index f99ddf2..84a1162 100644 --- a/README.md +++ b/README.md @@ -11,6 +11,8 @@ Since _AlienTrimmer_ v2.0, this GitLab repository replaces the [previous ftp rep _AlienTrimmer_ v2.0 (and higher) implements the same alien _k_-mer search algorithm as the initial release (see S1.2 [here](https://ars.els-cdn.com/content/image/1-s2.0-S0888754313001481-mmc1.pdf)), but use slightly different trimming criteria (see below). Of note, _AlienTrimmer_ v2.0 has simplified options, runs quite faster (especially when compiled with [GraalVM](https://www.graalvm.org/)), and is able to read gzipped FASTQ files. +Note that alien oligo-nucleotide sequence(s) can be easily inferred without any prior knowledge using [AlienDiscover](https://gitlab.pasteur.fr/GIPhy/AlienDiscover). + ## Installation -- GitLab