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  • v3.1

    6ee4d367 · 3.1 · 
    # v3.1  (250811ac)
+ new option -d to discard reads with internal alien oligos (often observed in long reads)
+ new option -N to use preset parameters for nanopore reads
+ edited usage to display recommended parameters
+ reimplementation of the method getAlienOligo (slightly faster now)
+ 4x faster gzip compression, thanks to Deflater.BEST_SPEED and increased BUFFER_SIZE
+ implementation of the bash wrapper AlienTrimmer.sh

  • 3.0

    fee17373 · 3.0 · 
    v3.0  (250720ac)
+  adding new option -c to carry out low residue content region clipping
+  adding constraint when setting the 3' trimming position (prevent from over-trimming in some rare cases)
+  only reads UTF8-formatted input files
+  now deals with Phred quality scores up to 95

  • 2.1

    881b1952 · v2.1 ·
    Release: 2.1

  • 2.0

    5cb0665d · v2.0 · 
    the new AlienTrimmer version 2.0