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  • v3.1
    6ee4d367 · 3.1 ·
    # v3.1  (250811ac)
    + new option -d to discard reads with internal alien oligos (often observed in long reads)
    + new option -N to use preset parameters for nanopore reads
    + edited usage to display recommended parameters
    + reimplementation of the method getAlienOligo (slightly faster now)
    + 4x faster gzip compression, thanks to Deflater.BEST_SPEED and increased BUFFER_SIZE
    + implementation of the bash wrapper AlienTrimmer.sh
  • 3.0
    fee17373 · 3.0 ·
    v3.0  (250720ac)
    +  adding new option -c to carry out low residue content region clipping
    +  adding constraint when setting the 3' trimming position (prevent from over-trimming in some rare cases)
    +  only reads UTF8-formatted input files
    +  now deals with Phred quality scores up to 95
  • 2.1
    881b1952 · v2.1 ·
    Release: 2.1
  • 2.0
    5cb0665d · v2.0 ·
    the new AlienTrimmer version 2.0