From 4539aa632ce28dedd5828a76abff8cc2d171b976 Mon Sep 17 00:00:00 2001
From: Alexis CRISCUOLO <criscuol@pasteur.fr>
Date: Thu, 8 Feb 2024 12:36:59 +0100
Subject: [PATCH] 2.00
---
README.md | 2 +-
src/BMGE.java | 6 +++---
src/bmge/Eigen.java | 2 +-
src/bmge/MSA.java | 2 +-
src/bmge/MSAaa.java | 2 +-
src/bmge/MSAco.java | 2 +-
src/bmge/MSAnt.java | 2 +-
src/bmge/MSAry.java | 2 +-
src/bmge/Model.java | 2 +-
src/bmge/SMatrix.java | 2 +-
src/bmge/Utils.java | 2 +-
11 files changed, 13 insertions(+), 13 deletions(-)
diff --git a/README.md b/README.md
index d55153f..5afe360 100644
--- a/README.md
+++ b/README.md
@@ -64,7 +64,7 @@ On computers with [GraalVM](https://www.graalvm.org/downloads/) installed, a nat
```bash
javac BMGE.java
native-image BMGE BMGE
-rm BMGE.class bmge/*.class
+rm BMGE.build_artifacts.txt BMGE.class bmge/*.class
```
This will create the native executable `BMGE` that can be run with the following command line model:
```bash
diff --git a/src/BMGE.java b/src/BMGE.java
index 23c424f..6ce81ba 100644
--- a/src/BMGE.java
+++ b/src/BMGE.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This program is free software: you can redistribute it and/or modify it under the terms of the GNU
General Public License as published by the Free Software Foundation, either version 3 of the License, or
@@ -45,7 +45,7 @@ import java.util.stream.IntStream;
public class BMGE {
//### constants ###############################################################
- static final String VERSION = "2.0 Copyright (C) 2010-2022 Institut Pasteur";
+ static final String VERSION = "2.0 Copyright (C) 2010-2024 Institut Pasteur";
static final String NOTHING = "N.o./.T.h.I.n.G";
static final byte NONE = (byte) 0;
static final byte AA = (byte) 10;
@@ -612,7 +612,7 @@ public class BMGE {
public static void usage() {
System.out.println("");
- System.out.println(" BMGE v." + VERSION);
+ System.out.println(" BMGE v" + VERSION);
System.out.println("");
System.out.println(" Block Mapping and Gathering with Entropy");
System.out.println(" Criscuolo and Gribaldo (2010) doi:10.1186/1471-2148-10-210");
diff --git a/src/bmge/Eigen.java b/src/bmge/Eigen.java
index 2b1a83f..182f418 100644
--- a/src/bmge/Eigen.java
+++ b/src/bmge/Eigen.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
diff --git a/src/bmge/MSA.java b/src/bmge/MSA.java
index 802a922..42ea04c 100644
--- a/src/bmge/MSA.java
+++ b/src/bmge/MSA.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
diff --git a/src/bmge/MSAaa.java b/src/bmge/MSAaa.java
index 0f87f6d..1922436 100644
--- a/src/bmge/MSAaa.java
+++ b/src/bmge/MSAaa.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
diff --git a/src/bmge/MSAco.java b/src/bmge/MSAco.java
index d9885a4..96352fa 100644
--- a/src/bmge/MSAco.java
+++ b/src/bmge/MSAco.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
diff --git a/src/bmge/MSAnt.java b/src/bmge/MSAnt.java
index de919cf..aabc0d1 100644
--- a/src/bmge/MSAnt.java
+++ b/src/bmge/MSAnt.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
diff --git a/src/bmge/MSAry.java b/src/bmge/MSAry.java
index 8799afb..187d0ab 100644
--- a/src/bmge/MSAry.java
+++ b/src/bmge/MSAry.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
diff --git a/src/bmge/Model.java b/src/bmge/Model.java
index 0782b85..2e10522 100644
--- a/src/bmge/Model.java
+++ b/src/bmge/Model.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
diff --git a/src/bmge/SMatrix.java b/src/bmge/SMatrix.java
index c1fd765..e8f0365 100644
--- a/src/bmge/SMatrix.java
+++ b/src/bmge/SMatrix.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
diff --git a/src/bmge/Utils.java b/src/bmge/Utils.java
index 83cf397..8891c9f 100644
--- a/src/bmge/Utils.java
+++ b/src/bmge/Utils.java
@@ -3,7 +3,7 @@
BMGE: Block Mapping and Gathering with Entropy
- Copyright (C) 2010-2022 Institut Pasteur
+ Copyright (C) 2010-2024 Institut Pasteur
This file is part of BMGE.
--
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