Commit 7dc1e3f6 authored by Alexis  CRISCUOLO's avatar Alexis CRISCUOLO

0.01

parent 949b8ccf
......@@ -381,9 +381,10 @@ awk 'BEGIN{s=8371282;p=0} {t=t$0}
print t}' msa.fasta.treefile > msa.nwk
```
The final phylogenetic tree (_msa.nwk_ in _example/_) is represented below (to be compared with Figure 2 in [Seth-Smith et al. 2019](https://wwwnc.cdc.gov/eid/article/25/6/17-2119_article))
The final phylogenetic tree (_msa.nwk_ in _example/_) is represented below (to be compared with Figure 2 in [Seth-Smith et al. 2019](https://wwwnc.cdc.gov/eid/article/25/6/17-2119_article)).
<iframe width="800" height="900" src="https://phylogeny.io/share/0ad13a8140437565f9593fba1b04b36028dc882b"></iframe>
![CH16 SNP tree](example/msa.nwk.png "CH16 SNP tree")
<!--- <iframe width="800" height="900" src="https://phylogeny.io/share/0ad13a8140437565f9593fba1b04b36028dc882b"></iframe> --->
<!--- https://phylogeny.io/edit/0ad13a8140437565f9593fba1b04b36028dc882b/dcc6740bddd18a1f0f93c031ad38beaf5c17b4e6 --->
## References
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment