VERSION=1.1 + new option -b, -5, -3 to clip input HTS reads + new option -d to set the minimum coverage depth to build each position of the output sequence + new option -l to set the minimum HTS read length + new option -m (minimum no. matches) to replace option -p (subject coverage proportion) + new option -x to use some of the available optimized presets of samtools consensus # + new option -v to display analysis reports + improved initial reference building + improved minimap2 parameters + improved consensus sequence computing