VERSION=1.2 + MIN_SUBJECT_COVERAGE set to 0.9 for better accuracy + gaps are now used to compute the consensus sequence (many gaps can now lead to a N) + option -o is now non-mandatory + modified default option -m (100 instead of 50) + new option -n to limit the no. HTS reads + new option -F to write ouput sequence(s) in FASTQ format + updated summary reports (option -v) + improved overall speed + fixed bug when reading gziped files + fixed bug when reading multiple FASTA files + SAMTOOLS_CALMD before SAMTOOLS_PILEUP to prevent some freezing (sometimes observed)