From 361f9cf4a5f66aaae9965371fbff1de71a6416e7 Mon Sep 17 00:00:00 2001 From: Alexis CRISCUOLO <alexis.criscuolo@pasteur.fr> Date: Tue, 15 May 2018 21:34:02 +0200 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 97cbf4f..215b426 100644 --- a/README.md +++ b/README.md @@ -68,7 +68,7 @@ Launch _eFASTA_ without option to read the following documentation: ## Example -The directory _example_ contains the FASTA-formatted file _Ecoli.O104H4.plsm.fna_. This file contains the three plasmid sequences pAA-EA11, pESBL-EA11 and pG-EA11 of the bacteria _Escherichia coli_ O104:H4 _str._ 2011C-3493. As a tblastn search against these plasmid sequences indicates that the region comprised between the nucleotide indexes 31400 and 31293 of pESBL-EA11 (accession number CP003291) is significantly similar to the query amino-acid sequence, _eFASTA_ could be very useful to extract this nucleotide region. +The directory _example_ contains the FASTA-formatted file _Ecoli.O104H4.plsm.fna_. This file contains the three plasmid sequences pAA-EA11, pESBL-EA11 and pG-EA11 of the bacteria _Escherichia coli_ O104:H4 _str._ 2011C-3493 (accession numbers: CP003291, CP003290 and CP003292, respectively). As a tblastn search against these plasmid sequences indicates that the region comprised between the nucleotide indexes 31400 and 31293 of CP003291 (therefore reverse-complement) is significantly similar to the query amino-acid sequence, _eFASTA_ could be very useful to extract this likely coding region. ##### Standard extraction ```bash -- GitLab