Commit 493638bd authored by Alexis  CRISCUOLO's avatar Alexis CRISCUOLO
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1.0

parent ab45b7c2
......@@ -107,7 +107,7 @@ Run _fastq_info_ without option to read the following documentation:
* In outputted results, every empty entry is indicated by a dot instead of zero.
* Tab-delimited option `-v t` enables to output only several statistics: numbers of HTS reads and bases (NR and NB, respectively), average HTS read length (AL), the three quartiles of the global Phred score distribution (BQ1, BQ2, BQ3) and the three quartiles of the average Phred score per HTS read distribution (RQ1, RQ2, RQ3). For detailled distributions per HTS read position, use options `-v r` or `-v f`.
* Tab-delimited option `-v t` enables to output only several statistics: numbers of HTS reads and bases (NR and NB, respectively), average HTS read length (AL), the three quartiles of the global Phred score distribution (BQ1, BQ2, BQ3) and the three quartiles of the average Phred score per HTS read distribution (RQ1, RQ2, RQ3). For detailed distributions per HTS read position and/or Phred score value, use options `-v r` or `-v f`.
* Specific AWK interpreters can be used via the option `-a`. _fastq_info_ was successfully run together with [gawk](https://www.gnu.org/software/gawk/), [nawk](https://github.com/onetrueawk/), [mawk](https://invisible-island.net/mawk/), and [goawk](https://github.com/benhoyt/goawk). However, faster running times were generally observed using [gawk](https://www.gnu.org/software/gawk/) versions ≥ 4.0 (on Linux).
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