Commit 8b35606d authored by Alexis  CRISCUOLO's avatar Alexis CRISCUOLO
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3.0

parent bbc48833
This diff is collapsed.
##File: SRR001666_1.fastq.gz
#no.reads(NR): 7047668
#no.bases(NB): 253716048
#avg.lgt(AL): 36.0
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
n Lfreq pA pC pG pT pN Efreq Q1 Q2 Q3 Q= 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
----- ------ ------ ------ ------ ------ ------ ------ -- -- -- ------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
0 . . . . . . 78.12 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
1 . 27.60 23.00 24.84 24.56 . 12.71 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 98.7
2 . 26.26 23.68 23.79 26.26 . 4.18 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 98.7
3 . 25.36 24.80 23.72 26.12 . 1.88 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 98.0
4 . 25.08 24.67 24.79 25.46 . 1.01 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 97.4
5 . 25.19 24.21 25.33 25.27 . 0.63 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 96.5
6 . 24.88 25.46 25.10 24.56 . 0.42 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 95.5
7 . 25.10 24.65 25.41 24.85 . 0.29 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 96.0
8 . 24.97 25.29 24.79 24.95 . 0.22 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.3 0.3 93.9
9 . 24.50 25.51 25.01 24.98 . 0.15 40 40 40 . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 94.4
10 . 24.91 25.29 25.23 24.58 0.00 0.11 40 40 40 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.3 94.0
11 . 24.73 25.38 25.02 24.88 . 0.08 40 40 40 . 0.0 0.0 0.0 0.0 0.1 0.0 0.1 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 93.2
12 . 24.32 25.84 25.22 24.61 . 0.06 40 40 40 . 0.0 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.3 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 90.4
13 . 24.62 25.53 25.28 24.55 0.03 0.04 40 40 40 0.0 0.1 0.0 0.1 0.2 0.2 0.1 0.1 0.2 0.2 0.4 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 86.9
14 . 24.52 25.54 25.24 24.69 0.01 0.03 40 40 40 0.0 0.1 0.0 0.1 0.2 0.3 0.2 0.2 0.2 0.2 0.5 0.3 0.3 0.3 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.6 83.7
15 . 24.28 25.79 25.35 24.56 0.02 0.02 40 40 40 0.0 0.1 0.0 0.1 0.2 0.3 0.2 0.2 0.2 0.2 0.5 0.3 0.3 0.3 0.3 0.3 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.6 0.6 0.6 0.6 0.6 0.6 84.8
16 . 24.49 25.57 25.44 24.44 0.05 0.01 40 40 40 0.1 0.1 0.1 0.1 0.3 0.3 0.2 0.2 0.2 0.3 0.6 0.3 0.4 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.5 0.6 0.6 0.6 0.6 0.6 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.8 0.8 0.8 0.8 0.8 0.8 80.0
17 . 24.41 25.72 25.27 24.55 0.05 0.01 40 40 40 0.0 0.1 0.1 0.2 0.3 0.4 0.2 0.3 0.3 0.3 0.8 0.4 0.5 0.5 0.5 0.6 0.6 0.6 0.6 0.6 0.7 0.7 0.7 0.7 0.7 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.9 0.9 0.9 0.9 0.9 76.0
18 . 24.25 25.93 25.40 24.36 0.06 0.01 36 40 40 0.1 0.1 0.1 0.2 0.4 0.5 0.3 0.3 0.3 0.4 0.8 0.5 0.5 0.6 0.6 0.6 0.7 0.7 0.7 0.8 0.8 0.8 0.8 0.9 0.9 0.9 0.9 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 71.8
19 . 24.43 25.78 25.45 24.26 0.08 0.01 33 40 40 0.1 0.2 0.1 0.2 0.5 0.6 0.3 0.4 0.4 0.5 1.1 0.6 0.7 0.7 0.7 0.8 0.8 0.8 0.9 0.9 0.9 0.9 1.0 1.0 1.0 1.0 1.0 1.0 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 67.9
20 . 24.31 25.74 25.45 24.43 0.07 0.01 34 40 40 0.1 0.2 0.1 0.2 0.5 0.6 0.3 0.4 0.4 0.4 1.0 0.6 0.6 0.7 0.7 0.7 0.8 0.8 0.8 0.9 0.9 0.9 0.9 0.9 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.1 1.1 1.1 1.1 1.0 1.1 1.0 1.1 69.0
21 . 24.24 25.96 25.47 24.28 0.06 0.00 30 40 40 0.1 0.2 0.1 0.3 0.5 0.6 0.4 0.4 0.5 0.5 1.2 0.7 0.7 0.8 0.8 0.9 0.9 1.0 1.0 1.0 1.1 1.1 1.1 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 63.4
22 . 24.40 25.89 25.49 24.15 0.07 0.00 27 40 40 0.1 0.2 0.1 0.3 0.6 0.8 0.5 0.5 0.6 0.7 1.5 0.8 0.9 1.0 1.0 1.1 1.1 1.1 1.2 1.2 1.2 1.2 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.2 1.2 1.2 59.1
23 . 24.37 25.77 25.44 24.36 0.06 0.00 27 40 40 0.1 0.3 0.2 0.4 0.6 0.8 0.5 0.5 0.6 0.6 1.5 0.8 0.9 1.0 1.0 1.1 1.1 1.1 1.2 1.2 1.2 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.2 1.2 1.2 58.9
24 . 24.12 26.16 25.50 24.20 0.03 0.00 24 40 40 0.0 0.3 0.2 0.4 0.8 1.0 0.6 0.7 0.8 0.8 1.9 1.1 1.1 1.2 1.2 1.3 1.3 1.3 1.4 1.4 1.4 1.4 1.4 1.4 1.5 1.5 1.5 1.5 1.4 1.4 1.4 1.4 1.4 1.4 1.3 1.3 1.3 1.3 1.3 1.2 53.5
25 . 24.38 25.89 25.50 24.22 0.01 . 23 40 40 0.0 0.3 0.2 0.5 0.8 1.0 0.6 0.7 0.8 0.9 2.0 1.1 1.2 1.2 1.3 1.3 1.4 1.4 1.4 1.4 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.4 1.4 1.4 1.4 1.4 1.3 1.3 1.3 1.3 1.2 52.0
26 . 24.28 26.05 25.36 24.30 0.01 . 21 37 40 0.0 0.4 0.2 0.6 1.1 1.3 0.8 0.9 1.0 1.1 2.3 1.3 1.3 1.4 1.5 1.5 1.5 1.6 1.6 1.6 1.6 1.6 1.6 1.6 1.6 1.6 1.6 1.6 1.6 1.5 1.5 1.5 1.4 1.4 1.4 1.4 1.3 1.3 1.3 1.2 47.4
27 . 24.07 26.16 25.36 24.32 0.09 . 20 36 40 0.1 0.4 0.3 0.6 1.1 1.3 0.8 0.9 1.0 1.1 2.4 1.3 1.4 1.5 1.5 1.5 1.6 1.6 1.6 1.7 1.7 1.7 1.7 1.7 1.6 1.6 1.6 1.6 1.6 1.5 1.5 1.5 1.5 1.4 1.4 1.4 1.3 1.3 1.3 1.2 46.1
28 . 24.26 25.85 25.41 24.33 0.15 . 19 35 40 0.2 0.5 0.3 0.7 1.2 1.5 0.9 1.0 1.1 1.2 2.6 1.4 1.5 1.6 1.6 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.6 1.6 1.6 1.5 1.5 1.5 1.4 1.4 1.4 1.3 1.3 1.2 1.2 43.9
29 . 24.14 26.10 25.22 24.38 0.16 . 17 32 40 0.2 0.6 0.4 0.8 1.4 1.7 1.0 1.1 1.2 1.3 3.0 1.6 1.7 1.8 1.8 1.8 1.9 1.9 1.9 1.9 1.9 1.9 1.8 1.8 1.8 1.8 1.7 1.7 1.6 1.6 1.6 1.5 1.5 1.4 1.4 1.4 1.3 1.3 1.2 1.2 39.7
30 . 23.90 26.48 25.24 24.21 0.18 . 16 29 40 0.2 0.7 0.4 0.9 1.6 2.0 1.2 1.3 1.4 1.5 3.3 1.8 1.9 1.9 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 1.9 1.9 1.9 1.8 1.8 1.7 1.7 1.6 1.6 1.5 1.5 1.4 1.4 1.3 1.3 1.3 1.2 1.2 36.0
31 . 24.11 26.04 25.46 24.17 0.21 . 15 28 40 0.2 0.8 0.5 1.0 1.7 2.1 1.2 1.4 1.5 1.6 3.5 1.9 2.0 2.0 2.0 2.1 2.1 2.1 2.1 2.1 2.0 2.0 2.0 1.9 1.9 1.8 1.8 1.7 1.7 1.6 1.6 1.5 1.5 1.4 1.4 1.3 1.3 1.2 1.2 1.1 34.4
32 . 24.24 25.99 25.23 24.32 0.22 . 14 26 40 0.2 0.9 0.6 1.1 1.8 2.3 1.4 1.5 1.6 1.8 3.9 2.1 2.2 2.2 2.3 2.3 2.3 2.3 2.2 2.2 2.2 2.1 2.1 2.0 1.9 1.9 1.8 1.7 1.7 1.6 1.6 1.5 1.4 1.4 1.3 1.3 1.2 1.2 1.1 1.1 30.7
33 . 23.92 26.12 25.30 24.46 0.20 . 13 25 40 0.2 1.0 0.6 1.3 2.0 2.5 1.5 1.6 1.8 1.9 4.2 2.2 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.2 2.2 2.1 2.1 2.0 1.9 1.9 1.8 1.7 1.7 1.6 1.5 1.5 1.4 1.3 1.3 1.2 1.2 1.1 1.1 1.0 29.1
34 . 24.01 26.19 25.27 24.32 0.20 . 12 23 40 0.2 1.2 0.7 1.5 2.4 2.9 1.7 1.8 2.0 2.1 4.6 2.4 2.4 2.5 2.5 2.4 2.4 2.4 2.3 2.3 2.2 2.1 2.1 2.0 1.9 1.8 1.8 1.7 1.6 1.5 1.5 1.4 1.3 1.3 1.2 1.2 1.1 1.1 1.0 1.0 26.2
35 . 23.85 26.02 25.10 24.81 0.22 . 11 22 39 0.2 1.4 0.8 1.7 2.6 3.2 1.8 2.0 2.1 2.3 4.8 2.5 2.5 2.6 2.5 2.5 2.5 2.4 2.4 2.3 2.2 2.1 2.0 2.0 1.9 1.8 1.7 1.6 1.6 1.5 1.4 1.4 1.3 1.2 1.2 1.1 1.1 1.0 1.0 0.9 24.7
36 100.00 23.56 26.21 25.23 24.75 0.24 . 11 21 39 0.2 1.5 0.9 1.8 2.8 3.4 1.9 2.1 2.2 2.3 4.9 2.5 2.5 2.5 2.5 2.5 2.4 2.4 2.3 2.2 2.2 2.1 2.0 1.9 1.8 1.8 1.7 1.6 1.5 1.5 1.4 1.3 1.3 1.2 1.1 1.1 1.0 1.0 1.0 0.9 24.8
----- ------ ------ ------ ------ ------ ------ ------ -- -- -- ------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
Q1 Q2 Q3 Q= 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
-- -- -- ------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
all.Phred(B) 30 40 40 0.1 0.3 0.2 0.4 0.7 0.9 0.5 0.6 0.6 0.7 1.5 0.8 0.9 0.9 0.9 0.9 0.9 1.0 1.0 1.0 1.0 1.0 1.0 1.0 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.7 67.7
avg.Phred(R) 32 35 37 . . 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.3 0.3 0.4 0.4 0.5 0.6 0.7 0.9 1.2 1.5 1.9 2.5 3.2 4.0 4.9 6.0 7.2 8.3 9.4 10.2 10.6 10.4 9.1 4.7
no.Errors(E) 0 0 0 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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This diff is collapsed.
This diff is collapsed.
##File: SRR001666_1.fastq.gz
#no.reads(NR): 7047668
#no.bases(NB): 253716048
#avg.lgt(AL): 36.0
----------------------------------------------------------------
n Lfreq pA pC pG pT pN Efreq Q1 Q2 Q3
----- ------ ------ ------ ------ ------ ------ ------ -- -- --
0 . . . . . . 78.12 . . .
1 . 27.60 23.00 24.84 24.56 . 12.71 40 40 40
2 . 26.26 23.68 23.79 26.26 . 4.18 40 40 40
3 . 25.36 24.80 23.72 26.12 . 1.88 40 40 40
4 . 25.08 24.67 24.79 25.46 . 1.01 40 40 40
5 . 25.19 24.21 25.33 25.27 . 0.63 40 40 40
6 . 24.88 25.46 25.10 24.56 . 0.42 40 40 40
7 . 25.10 24.65 25.41 24.85 . 0.29 40 40 40
8 . 24.97 25.29 24.79 24.95 . 0.22 40 40 40
9 . 24.50 25.51 25.01 24.98 . 0.15 40 40 40
10 . 24.91 25.29 25.23 24.58 0.00 0.11 40 40 40
11 . 24.73 25.38 25.02 24.88 . 0.08 40 40 40
12 . 24.32 25.84 25.22 24.61 . 0.06 40 40 40
13 . 24.62 25.53 25.28 24.55 0.03 0.04 40 40 40
14 . 24.52 25.54 25.24 24.69 0.01 0.03 40 40 40
15 . 24.28 25.79 25.35 24.56 0.02 0.02 40 40 40
16 . 24.49 25.57 25.44 24.44 0.05 0.01 40 40 40
17 . 24.41 25.72 25.27 24.55 0.05 0.01 40 40 40
18 . 24.25 25.93 25.40 24.36 0.06 0.01 36 40 40
19 . 24.43 25.78 25.45 24.26 0.08 0.01 33 40 40
20 . 24.31 25.74 25.45 24.43 0.07 0.01 34 40 40
21 . 24.24 25.96 25.47 24.28 0.06 0.00 30 40 40
22 . 24.40 25.89 25.49 24.15 0.07 0.00 27 40 40
23 . 24.37 25.77 25.44 24.36 0.06 0.00 27 40 40
24 . 24.12 26.16 25.50 24.20 0.03 0.00 24 40 40
25 . 24.38 25.89 25.50 24.22 0.01 . 23 40 40
26 . 24.28 26.05 25.36 24.30 0.01 . 21 37 40
27 . 24.07 26.16 25.36 24.32 0.09 . 20 36 40
28 . 24.26 25.85 25.41 24.33 0.15 . 19 35 40
29 . 24.14 26.10 25.22 24.38 0.16 . 17 32 40
30 . 23.90 26.48 25.24 24.21 0.18 . 16 29 40
31 . 24.11 26.04 25.46 24.17 0.21 . 15 28 40
32 . 24.24 25.99 25.23 24.32 0.22 . 14 26 40
33 . 23.92 26.12 25.30 24.46 0.20 . 13 25 40
34 . 24.01 26.19 25.27 24.32 0.20 . 12 23 40
35 . 23.85 26.02 25.10 24.81 0.22 . 11 22 39
36 100.00 23.56 26.21 25.23 24.75 0.24 . 11 21 39
----- ------ ------ ------ ------ ------ ------ ------ -- -- --
Q1 Q2 Q3
-- -- --
all.Phred(B) 30 40 40
avg.Phred(R) 32 35 37
no.Errors(E) 0 0 0
----------------------------------------------------------------
##File: SRR001666_2.fastq.gz
#no.reads(NR): 7047668
#no.bases(NB): 253716048
#avg.lgt(AL): 36.0
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
n Lfreq pA pC pG pT pN Efreq Q1 Q2 Q3 Q= 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
----- ------ ------ ------ ------ ------ ------ ------ -- -- -- ------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
0 . . . . . . 47.10 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
1 . 27.43 24.14 23.31 25.03 0.09 26.29 40 40 40 0.1 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 94.2
2 . 27.21 23.34 23.77 25.55 0.13 12.44 40 40 40 0.1 0.0 0.0 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 94.2
3 . 25.58 24.88 24.19 25.17 0.18 5.93 40 40 40 0.2 0.1 0.0 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 92.3
4 . 24.62 25.17 25.17 24.82 0.22 3.01 40 40 40 0.2 0.1 0.0 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 92.3
5 . 24.87 24.22 25.59 25.11 0.21 1.67 40 40 40 0.2 0.1 0.0 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.3 0.1 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 91.5
6 . 24.69 25.45 25.39 24.23 0.25 1.00 40 40 40 0.2 0.1 0.0 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.3 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.4 0.4 0.4 0.4 0.4 0.4 90.6
7 . 24.83 24.49 25.80 24.67 0.21 0.65 40 40 40 0.2 0.1 0.0 0.1 0.2 0.2 0.1 0.1 0.1 0.2 0.4 0.2 0.2 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 87.4
8 . 24.93 25.01 25.05 24.81 0.21 0.44 40 40 40 0.2 0.1 0.0 0.1 0.2 0.2 0.1 0.1 0.1 0.2 0.4 0.2 0.2 0.2 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 86.8
9 . 24.43 25.32 25.25 24.77 0.23 0.32 40 40 40 0.2 0.1 0.1 0.1 0.2 0.3 0.2 0.2 0.2 0.2 0.5 0.3 0.3 0.3 0.3 0.4 0.4 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.7 0.7 0.7 0.7 0.7 0.7 82.7
10 . 24.83 25.13 25.50 24.30 0.25 0.24 40 40 40 0.2 0.1 0.1 0.1 0.3 0.3 0.2 0.2 0.2 0.2 0.6 0.3 0.3 0.4 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.5 0.6 0.6 0.6 0.6 0.6 0.6 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.8 0.8 0.8 80.5
11 . 24.67 25.24 25.32 24.50 0.26 0.18 40 40 40 0.3 0.1 0.1 0.2 0.3 0.3 0.2 0.2 0.2 0.3 0.6 0.3 0.4 0.4 0.4 0.5 0.5 0.5 0.5 0.6 0.6 0.6 0.6 0.6 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 78.6
12 . 24.43 25.55 25.42 24.38 0.21 0.14 39 40 40 0.2 0.1 0.1 0.2 0.3 0.4 0.2 0.3 0.3 0.3 0.8 0.4 0.5 0.5 0.5 0.6 0.6 0.6 0.7 0.7 0.7 0.7 0.8 0.8 0.8 0.8 0.8 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 1.0 1.0 74.4
13 . 24.68 25.31 25.39 24.36 0.25 0.11 35 40 40 0.3 0.2 0.1 0.2 0.3 0.4 0.3 0.3 0.3 0.4 0.8 0.5 0.5 0.6 0.6 0.7 0.7 0.7 0.8 0.8 0.8 0.9 0.9 0.9 1.0 1.0 1.0 1.0 1.0 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 70.0
14 . 24.62 25.33 25.30 24.50 0.26 0.09 33 40 40 0.3 0.2 0.1 0.2 0.4 0.5 0.3 0.3 0.4 0.4 0.9 0.5 0.6 0.6 0.7 0.7 0.8 0.8 0.9 0.9 0.9 1.0 1.0 1.0 1.0 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.1 1.2 1.2 1.1 1.1 1.1 1.1 1.1 67.8
15 . 24.36 25.64 25.36 24.40 0.24 0.07 31 40 40 0.2 0.2 0.1 0.2 0.4 0.5 0.3 0.4 0.4 0.5 1.1 0.6 0.7 0.7 0.8 0.8 0.9 0.9 1.0 1.0 1.0 1.1 1.1 1.1 1.1 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 64.8
16 . 24.51 25.49 25.45 24.31 0.24 0.05 28 40 40 0.2 0.3 0.1 0.3 0.5 0.7 0.4 0.5 0.5 0.6 1.3 0.8 0.8 0.9 0.9 1.0 1.0 1.1 1.1 1.2 1.2 1.2 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.2 59.8
17 . 24.43 25.61 25.37 24.39 0.21 0.04 25 40 40 0.2 0.3 0.2 0.3 0.6 0.8 0.5 0.5 0.6 0.7 1.6 0.9 1.0 1.1 1.1 1.2 1.2 1.3 1.3 1.4 1.4 1.4 1.4 1.4 1.5 1.5 1.5 1.5 1.5 1.5 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.3 1.3 1.3 54.9
18 . 24.19 25.75 25.42 24.25 0.40 0.02 24 40 40 0.4 0.3 0.2 0.4 0.6 0.8 0.5 0.6 0.7 0.7 1.7 1.0 1.1 1.2 1.2 1.3 1.3 1.4 1.4 1.5 1.5 1.5 1.5 1.5 1.5 1.6 1.6 1.6 1.5 1.5 1.5 1.5 1.5 1.5 1.4 1.4 1.4 1.4 1.3 1.3 52.2
19 . 24.37 25.64 25.53 24.22 0.24 0.01 22 39 40 0.2 0.3 0.2 0.4 0.7 1.0 0.6 0.7 0.8 0.9 2.0 1.1 1.2 1.3 1.4 1.4 1.5 1.5 1.6 1.6 1.6 1.6 1.7 1.7 1.7 1.7 1.7 1.6 1.6 1.6 1.6 1.6 1.5 1.5 1.5 1.4 1.4 1.4 1.3 1.3 48.8
20 . 24.27 25.68 25.46 24.34 0.25 0.01 20 35 40 0.3 0.4 0.2 0.5 0.9 1.2 0.7 0.8 0.9 1.0 2.4 1.3 1.4 1.5 1.6 1.6 1.7 1.7 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.7 1.7 1.7 1.6 1.6 1.6 1.5 1.5 1.4 1.4 1.4 1.3 1.3 43.9
21 . 24.06 25.88 25.51 24.26 0.29 0.01 19 33 40 0.3 0.5 0.3 0.6 1.0 1.3 0.8 0.9 1.0 1.1 2.6 1.5 1.6 1.7 1.7 1.8 1.8 1.9 1.9 1.9 1.9 1.9 1.9 1.9 1.9 1.8 1.8 1.8 1.8 1.7 1.7 1.6 1.6 1.5 1.5 1.4 1.4 1.4 1.3 1.3 40.7
22 . 24.25 25.71 25.59 24.21 0.25 0.01 18 31 40 0.3 0.5 0.3 0.7 1.1 1.4 0.9 1.0 1.2 1.3 3.0 1.7 1.7 1.8 1.9 2.0 2.0 2.0 2.1 2.1 2.1 2.0 2.0 2.0 2.0 1.9 1.9 1.8 1.8 1.7 1.7 1.6 1.6 1.5 1.5 1.4 1.4 1.3 1.3 1.2 37.3
23 . 24.26 25.66 25.44 24.35 0.29 0.01 16 28 40 0.3 0.6 0.4 0.8 1.3 1.7 1.0 1.2 1.3 1.5 3.4 1.9 2.0 2.1 2.1 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.1 2.1 2.0 2.0 1.9 1.9 1.8 1.7 1.7 1.6 1.6 1.5 1.4 1.4 1.3 1.3 1.2 1.2 33.3
24 . 24.11 25.85 25.54 24.24 0.26 0.01 15 26 40 0.3 0.7 0.4 0.9 1.4 1.9 1.2 1.4 1.6 1.7 3.9 2.1 2.3 2.3 2.4 2.4 2.4 2.4 2.4 2.4 2.3 2.3 2.2 2.2 2.1 2.0 1.9 1.9 1.8 1.7 1.6 1.6 1.5 1.4 1.4 1.3 1.3 1.2 1.1 1.1 29.4
25 . 24.21 25.82 25.59 24.16 0.21 0.01 13 24 40 0.2 0.9 0.5 1.0 1.7 2.3 1.4 1.6 1.8 2.0 4.4 2.4 2.5 2.5 2.6 2.6 2.6 2.6 2.5 2.5 2.4 2.3 2.3 2.2 2.1 2.0 1.9 1.8 1.8 1.7 1.6 1.5 1.5 1.4 1.3 1.2 1.2 1.1 1.1 1.0 26.0
26 . 24.13 25.89 25.45 24.33 0.20 0.01 12 22 38 0.2 1.0 0.6 1.2 2.0 2.6 1.6 1.8 2.0 2.2 4.9 2.6 2.7 2.7 2.7 2.7 2.7 2.7 2.6 2.5 2.4 2.4 2.3 2.2 2.1 2.0 1.9 1.8 1.7 1.6 1.5 1.5 1.4 1.3 1.2 1.2 1.1 1.1 1.0 1.0 23.4
27 . 23.94 26.03 25.60 24.24 0.20 0.01 12 21 36 0.2 1.2 0.7 1.4 2.2 2.9 1.8 2.0 2.2 2.4 5.2 2.8 2.8 2.9 2.8 2.8 2.8 2.7 2.6 2.5 2.5 2.4 2.3 2.1 2.0 1.9 1.8 1.8 1.6 1.6 1.5 1.4 1.3 1.3 1.2 1.1 1.1 1.0 0.9 0.9 21.3
28 . 24.04 25.94 25.60 24.20 0.22 0.01 11 19 33 0.2 1.4 0.8 1.6 2.5 3.3 2.0 2.2 2.4 2.6 5.7 3.0 3.0 3.0 3.0 2.9 2.9 2.8 2.7 2.6 2.4 2.3 2.2 2.1 2.0 1.9 1.8 1.7 1.6 1.5 1.4 1.3 1.2 1.2 1.1 1.0 1.0 0.9 0.9 0.8 19.0
29 . 23.90 25.77 25.47 24.42 0.43 0.01 10 18 31 0.4 1.6 0.9 1.8 2.8 3.6 2.2 2.4 2.6 2.8 6.0 3.1 3.1 3.1 3.1 3.0 2.9 2.8 2.7 2.6 2.4 2.3 2.2 2.1 1.9 1.8 1.7 1.6 1.5 1.4 1.3 1.3 1.2 1.1 1.0 1.0 0.9 0.9 0.8 0.8 17.3
30 . 23.68 26.19 25.54 24.32 0.28 0.01 10 17 29 0.3 1.8 1.1 2.1 3.2 4.1 2.4 2.7 2.9 3.1 6.4 3.3 3.3 3.2 3.1 3.0 2.9 2.8 2.7 2.5 2.4 2.2 2.1 2.0 1.8 1.7 1.6 1.5 1.4 1.3 1.3 1.2 1.1 1.0 1.0 0.9 0.8 0.8 0.8 0.7 15.4
31 . 23.72 25.93 25.52 24.58 0.25 0.01 9 16 28 0.2 2.1 1.3 2.4 3.5 4.6 2.7 2.9 3.1 3.3 6.8 3.4 3.4 3.3 3.2 3.0 2.9 2.8 2.6 2.5 2.3 2.2 2.0 1.9 1.8 1.6 1.5 1.4 1.3 1.3 1.2 1.1 1.0 1.0 0.9 0.8 0.8 0.7 0.7 0.7 13.8
32 . 23.66 25.83 25.41 24.84 0.26 0.01 9 15 26 0.3 2.5 1.5 2.6 3.9 5.0 2.9 3.1 3.3 3.4 7.1 3.5 3.4 3.3 3.2 3.1 2.9 2.7 2.6 2.4 2.2 2.1 1.9 1.8 1.7 1.6 1.4 1.3 1.2 1.2 1.1 1.0 0.9 0.9 0.8 0.8 0.7 0.7 0.6 0.6 12.6
33 . 23.39 26.10 25.53 24.78 0.21 0.01 8 14 24 0.2 2.9 1.7 3.0 4.4 5.5 3.1 3.4 3.5 3.6 7.4 3.6 3.5 3.4 3.2 3.0 2.9 2.7 2.5 2.3 2.2 2.0 1.9 1.7 1.6 1.5 1.4 1.3 1.2 1.1 1.0 0.9 0.9 0.8 0.8 0.7 0.7 0.6 0.6 0.5 11.0
34 . 23.37 26.10 25.54 24.78 0.21 0.02 7 13 23 0.2 3.3 1.9 3.3 4.8 6.0 3.4 3.6 3.8 3.8 7.6 3.7 3.6 3.4 3.2 3.0 2.8 2.6 2.4 2.2 2.1 1.9 1.8 1.6 1.5 1.4 1.3 1.2 1.1 1.0 0.9 0.9 0.8 0.7 0.7 0.6 0.6 0.6 0.5 0.5 9.7
35 . 23.22 25.87 25.63 25.02 0.26 0.04 6 12 22 0.3 3.9 2.2 3.7 5.2 6.4 3.6 3.8 3.9 4.0 7.8 3.7 3.6 3.4 3.2 2.9 2.7 2.5 2.3 2.1 2.0 1.8 1.7 1.5 1.4 1.3 1.2 1.1 1.0 0.9 0.9 0.8 0.7 0.7 0.6 0.6 0.6 0.5 0.5 0.5 8.8
36 100.00 22.91 25.92 25.70 25.26 0.22 0.06 6 12 21 0.2 4.2 2.3 4.0 5.5 6.6 3.7 3.8 3.9 3.9 7.6 3.6 3.5 3.3 3.0 2.8 2.6 2.4 2.2 2.1 1.9 1.7 1.6 1.5 1.3 1.2 1.1 1.1 1.0 0.9 0.8 0.8 0.7 0.7 0.6 0.6 0.5 0.5 0.5 0.4 9.0
----- ------ ------ ------ ------ ------ ------ ------ -- -- -- ------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
Q1 Q2 Q3 Q= 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
-- -- -- ------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- ----- -----
all.Phred(B) 18 40 40 0.2 0.9 0.5 1.0 1.5 1.9 1.1 1.2 1.3 1.4 3.0 1.5 1.6 1.6 1.6 1.5 1.5 1.5 1.5 1.4 1.4 1.4 1.3 1.3 1.2 1.2 1.2 1.1 1.1 1.1 1.0 1.0 1.0 1.0 0.9 0.9 0.9 0.9 0.8 0.8 51.0
avg.Phred(R) 26 30 34 0.1 0.0 0.0 0.0 0.1 0.1 0.1 0.1 0.2 0.2 0.2 0.3 0.3 0.3 0.4 0.4 0.5 0.6 0.8 1.0 1.3 1.6 2.1 2.7 3.5 4.2 5.1 5.8 6.5 7.0 7.3 7.3 7.1 6.7 6.2 5.5 4.8 3.9 3.0 1.9 0.7
no.Errors(E) 0 1 2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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##File: SRR001666_2.fastq.gz
#no.reads(NR): 7047668
#no.bases(NB): 253716048
#avg.lgt(AL): 36.0
----------------------------------------------------------------
n Lfreq pA pC pG pT pN Efreq Q1 Q2 Q3
----- ------ ------ ------ ------ ------ ------ ------ -- -- --
0 . . . . . . 47.10 . . .
1 . 27.43 24.14 23.31 25.03 0.09 26.29 40 40 40
2 . 27.21 23.34 23.77 25.55 0.13 12.44 40 40 40
3 . 25.58 24.88 24.19 25.17 0.18 5.93 40 40 40
4 . 24.62 25.17 25.17 24.82 0.22 3.01 40 40 40
5 . 24.87 24.22 25.59 25.11 0.21 1.67 40 40 40
6 . 24.69 25.45 25.39 24.23 0.25 1.00 40 40 40
7 . 24.83 24.49 25.80 24.67 0.21 0.65 40 40 40
8 . 24.93 25.01 25.05 24.81 0.21 0.44 40 40 40
9 . 24.43 25.32 25.25 24.77 0.23 0.32 40 40 40
10 . 24.83 25.13 25.50 24.30 0.25 0.24 40 40 40
11 . 24.67 25.24 25.32 24.50 0.26 0.18 40 40 40
12 . 24.43 25.55 25.42 24.38 0.21 0.14 39 40 40
13 . 24.68 25.31 25.39 24.36 0.25 0.11 35 40 40
14 . 24.62 25.33 25.30 24.50 0.26 0.09 33 40 40
15 . 24.36 25.64 25.36 24.40 0.24 0.07 31 40 40
16 . 24.51 25.49 25.45 24.31 0.24 0.05 28 40 40
17 . 24.43 25.61 25.37 24.39 0.21 0.04 25 40 40
18 . 24.19 25.75 25.42 24.25 0.40 0.02 24 40 40
19 . 24.37 25.64 25.53 24.22 0.24 0.01 22 39 40
20 . 24.27 25.68 25.46 24.34 0.25 0.01 20 35 40
21 . 24.06 25.88 25.51 24.26 0.29 0.01 19 33 40
22 . 24.25 25.71 25.59 24.21 0.25 0.01 18 31 40
23 . 24.26 25.66 25.44 24.35 0.29 0.01 16 28 40
24 . 24.11 25.85 25.54 24.24 0.26 0.01 15 26 40
25 . 24.21 25.82 25.59 24.16 0.21 0.01 13 24 40
26 . 24.13 25.89 25.45 24.33 0.20 0.01 12 22 38
27 . 23.94 26.03 25.60 24.24 0.20 0.01 12 21 36
28 . 24.04 25.94 25.60 24.20 0.22 0.01 11 19 33
29 . 23.90 25.77 25.47 24.42 0.43 0.01 10 18 31
30 . 23.68 26.19 25.54 24.32 0.28 0.01 10 17 29
31 . 23.72 25.93 25.52 24.58 0.25 0.01 9 16 28
32 . 23.66 25.83 25.41 24.84 0.26 0.01 9 15 26
33 . 23.39 26.10 25.53 24.78 0.21 0.01 8 14 24
34 . 23.37 26.10 25.54 24.78 0.21 0.02 7 13 23
35 . 23.22 25.87 25.63 25.02 0.26 0.04 6 12 22
36 100.00 22.91 25.92 25.70 25.26 0.22 0.06 6 12 21
----- ------ ------ ------ ------ ------ ------ ------ -- -- --
Q1 Q2 Q3
-- -- --
all.Phred(B) 18 40 40
avg.Phred(R) 26 30 34
no.Errors(E) 0 1 2
----------------------------------------------------------------
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