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  • 25.12

    21948b03 · 25.12 · 
    VERSION=25.12
+ more alien oligos accepted:
=> without -n: all loco, as well as every hico with score >=75%
=> with    -n: all loco only
+ new Flye parameterization:
=> (a) --read-error 0.04 --min-overlap N95
=> (b) --read-error 0.04 --min-overlap N99
+ minidna is run with options -l 8000 -s for faster running times

  • 25.11

    fff472f6 · 25.11 · 
    VERSION=25.11
+ alien oligo assessment using ONT barcodes
+ short circular contig(s) are now independantly assembled using MINIDNA
+ large contigs are assembled using FLYE with options --read-error 0.03 --min-overlap N95
+ modified FASTA headers

  • 25.10

    454dcf1f · 25.10 · 
    VERSION=25.10
+ new default value -c 80
+ using several decreasing thresholds to approximate genome size
+ FLYE is run with option --read-error 0.05
+ FLYE option --min-overlap is now set with N90/2 to (try to) assemble small contigs
+ new successive processing steps:
   - cutting fully duplicated contigs (MAXIMAP2)
   - reorienting contigs and shows the starting CDS (DNAAPLER)
   - polishing reoriented contigs (FLYE)

  • 25.09

    a134a60d · 25.09 · 
    VERSION=25.09
+ initial release