From 8b38f28b889dc83d665e562c50362c8dc448a96a Mon Sep 17 00:00:00 2001
From: Andrey  ARISTOV <andrey.aristov@pasteur.fr>
Date: Wed, 8 Jun 2022 12:34:12 +0200
Subject: [PATCH] Update README.md

---
 README.md | 14 ++++++++++++--
 1 file changed, 12 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 57ad76e..6f4e1d1 100644
--- a/README.md
+++ b/README.md
@@ -6,6 +6,14 @@ This a snakemake pipeline allowing to reconstruct the 6-chips data automatically
 
 ## Running locally
 
+On Elissa computer find and launch the icon on the desktop "Snakemake".
+The terminal will open.
+The command to launch reconstruction:
+```
+snakemake -c12 D:\Andrey\Data\path_to_final_table.csv
+```
+For conveniense it is possible to drag and drop the folder into the terminal to get a valid path, then simply add the missing filename at the end.
+
 ## Running on the cluster
 
 ```
@@ -13,5 +21,7 @@ ssh USERNAME@maestro.pasteur.fr
 snk
 snakemake --cluster "srun -c12" -j32 ~/Anchor/Lena/Data/20220531-MIC-e.coli-cipro/{1st,2nd}exp/final_table.csv --cores 12
 ```
-In another terminal you can see the status of the jobs using sacct
-``` watch sacct```
+In another terminal you can see the status of the jobs using *sacct*
+``` 
+watch sacct
+```
-- 
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