From e44772023421c31dec02d7679fd92be304ad8f47 Mon Sep 17 00:00:00 2001 From: Andrey Aristov <aaristov@pasteur.fr> Date: Thu, 2 Jun 2022 14:02:56 +0200 Subject: [PATCH] upodate paths --- Snakefile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Snakefile b/Snakefile index e910ee8..cfe71a7 100644 --- a/Snakefile +++ b/Snakefile @@ -27,10 +27,10 @@ rule align_and_count_2D: template="template16_pad100-adj.tif", labels="labels_bin2+100.tif" output: - directory("{folder}/day{day}/BF_TRITC_aligned.zarr"), + zarr = directory("{folder}/day{day}/BF_TRITC_aligned.zarr"), table = "{folder}/day{day}/table.csv" shell: - "python align.py {input.data} {output} {input.concentrations} {input.template} {input.labels} {output.table} 0" + "python align.py {input.data} {output.zarr} {input.concentrations} {input.template} {input.labels} {output.table} 0" rule get_sizes_nd2: -- GitLab