diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..57ad76ed184b46b0cc29f6311b4e658c9842fdf3 --- /dev/null +++ b/README.md @@ -0,0 +1,17 @@ +# Multichip-snakemake + +This a snakemake pipeline allowing to reconstruct the 6-chips data automatically + +## Installation + +## Running locally + +## Running on the cluster + +``` +ssh USERNAME@maestro.pasteur.fr +snk +snakemake --cluster "srun -c12" -j32 ~/Anchor/Lena/Data/20220531-MIC-e.coli-cipro/{1st,2nd}exp/final_table.csv --cores 12 +``` +In another terminal you can see the status of the jobs using sacct +``` watch sacct```