From e779f39cd7b0f6ee121865e90a3ca99314ad5cef Mon Sep 17 00:00:00 2001
From: Andrey  ARISTOV <andrey.aristov@pasteur.fr>
Date: Wed, 8 Jun 2022 12:18:18 +0200
Subject: [PATCH] Add README.md

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 README.md | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)
 create mode 100644 README.md

diff --git a/README.md b/README.md
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+# Multichip-snakemake
+
+This a snakemake pipeline allowing to reconstruct the 6-chips data automatically
+
+## Installation
+
+## Running locally
+
+## Running on the cluster
+
+```
+ssh USERNAME@maestro.pasteur.fr
+snk
+snakemake --cluster "srun -c12" -j32 ~/Anchor/Lena/Data/20220531-MIC-e.coli-cipro/{1st,2nd}exp/final_table.csv --cores 12
+```
+In another terminal you can see the status of the jobs using sacct
+``` watch sacct```
-- 
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