diff --git a/Snakefile b/Snakefile index 78f8ac141f91a8652e88d65a8fbb5c3385433f63..ba663d765f6809bc7c8c4ec262efc4e033d09c04 100644 --- a/Snakefile +++ b/Snakefile @@ -16,7 +16,7 @@ rule align_and_count: input: data="{folder}/day{day}/BF_TRITC_maxZ.zarr", concentrations="{folder}/concentrations.yaml", - template="template16_pad100-adj.tif", + template="template16_pad100-adj-sm2.tif", labels="labels_bin2+100.tif" output: zarr = directory("{folder}/day{day}/BF_TRITC_aligned.zarr"),