From 067ae94a08cfd82b365b4c6ad8819ae1d1de7f54 Mon Sep 17 00:00:00 2001
From: Andrey Aristov <aaristov@pasteur.fr>
Date: Wed, 31 Aug 2022 17:14:23 +0200
Subject: [PATCH] fix tabulation
---
src/napari_segment/_reader.py | 17 ++++++++++++-----
1 file changed, 12 insertions(+), 5 deletions(-)
diff --git a/src/napari_segment/_reader.py b/src/napari_segment/_reader.py
index cb88a94..bb84413 100644
--- a/src/napari_segment/_reader.py
+++ b/src/napari_segment/_reader.py
@@ -48,16 +48,23 @@ def napari_get_reader(path):
def read_zarr(path):
- print(f"reading {path}")
+ print(f"read_zarr {path}")
+
try:
attrs = json.load(open(os.path.join(path, ".zattrs")))
info = attrs["multiscales"]["multiscales"][0]
+ except Exception as e:
+ raise e
+
+ dataset_paths = [os.path.join(path, d["path"]) for d in info["datasets"]]
+ datasets = [dask.array.from_zarr(p) for p in dataset_paths]
+
+ try:
channel_axis = info["channel_axis"]
print(f"found channel axis {channel_axis}")
- dataset_paths = [
- os.path.join(path, d["path"]) for d in info["datasets"]
- ]
- datasets = [dask.array.from_zarr(p) for p in dataset_paths]
+ except KeyError:
+ channel_axis = None
+
except Exception as e:
raise e
--
GitLab