From 58fc8405f9d633998164464eeb7c955f0aebf229 Mon Sep 17 00:00:00 2001
From: Andrey Aristov <aaristov@pasteur.fr>
Date: Thu, 19 May 2022 16:55:16 +0200
Subject: [PATCH] read parameters for napari
---
src/napari_segment/_reader.py | 17 ++++++++++++++++-
1 file changed, 16 insertions(+), 1 deletion(-)
diff --git a/src/napari_segment/_reader.py b/src/napari_segment/_reader.py
index b9f2910..0196ab7 100644
--- a/src/napari_segment/_reader.py
+++ b/src/napari_segment/_reader.py
@@ -63,13 +63,28 @@ def read_zarr(path):
except KeyError:
contrast_limits = None
+ try:
+ colormap = info["colormap"]
+ except KeyError:
+ colormap = None
+
+ try:
+ name = info["name"]
+ except KeyError:
+ print("name not found")
+ name = [os.path.basename(path)] * datasets[0].shape[channel_axis]
+ except Exception as e:
+ print("name exception", e.args)
+ name = os.path.basename(path)
+
return [
(
datasets,
{
"channel_axis": channel_axis,
- # "colormap": ["gray", "inferno"],
+ "colormap": colormap,
"contrast_limits": contrast_limits,
+ "name": name,
},
"image",
)
--
GitLab