From 6076f7d452cbf1a21b4133f1ccc78215108f6db9 Mon Sep 17 00:00:00 2001 From: Andrey Aristov <aaristov@pasteur.fr> Date: Tue, 17 May 2022 15:19:56 +0200 Subject: [PATCH] add lut limits --- src/napari_segment/_reader.py | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/src/napari_segment/_reader.py b/src/napari_segment/_reader.py index f0f6df9..b9f2910 100644 --- a/src/napari_segment/_reader.py +++ b/src/napari_segment/_reader.py @@ -57,13 +57,19 @@ def read_zarr(path): datasets = [dask.array.from_zarr(p) for p in dataset_paths] except Exception as e: raise e + + try: + contrast_limits = info["lut"] + except KeyError: + contrast_limits = None + return [ ( datasets, { "channel_axis": channel_axis, - "colormap": ["gray", "inferno"], - "contrast_limits": [(0, 65000), (0, 6000)], + # "colormap": ["gray", "inferno"], + "contrast_limits": contrast_limits, }, "image", ) -- GitLab