From 6076f7d452cbf1a21b4133f1ccc78215108f6db9 Mon Sep 17 00:00:00 2001
From: Andrey Aristov <aaristov@pasteur.fr>
Date: Tue, 17 May 2022 15:19:56 +0200
Subject: [PATCH] add lut limits

---
 src/napari_segment/_reader.py | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/src/napari_segment/_reader.py b/src/napari_segment/_reader.py
index f0f6df9..b9f2910 100644
--- a/src/napari_segment/_reader.py
+++ b/src/napari_segment/_reader.py
@@ -57,13 +57,19 @@ def read_zarr(path):
         datasets = [dask.array.from_zarr(p) for p in dataset_paths]
     except Exception as e:
         raise e
+
+    try:
+        contrast_limits = info["lut"]
+    except KeyError:
+        contrast_limits = None
+
     return [
         (
             datasets,
             {
                 "channel_axis": channel_axis,
-                "colormap": ["gray", "inferno"],
-                "contrast_limits": [(0, 65000), (0, 6000)],
+                # "colormap": ["gray", "inferno"],
+                "contrast_limits": contrast_limits,
             },
             "image",
         )
-- 
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