From c6496d43bdd18f3a91ea835c01068aae91003b5e Mon Sep 17 00:00:00 2001
From: Andrey Aristov <aaristov@pasteur.fr>
Date: Thu, 19 May 2022 17:14:49 +0200
Subject: [PATCH] fix tests
---
.gitignore | 1 +
setup.cfg | 43 +++++++++++++++++++----------------
src/napari_segment/_reader.py | 5 +++-
3 files changed, 28 insertions(+), 21 deletions(-)
diff --git a/.gitignore b/.gitignore
index fd2845d..42fb8d4 100644
--- a/.gitignore
+++ b/.gitignore
@@ -83,3 +83,4 @@ venv/
# written by setuptools_scm
**/_version.py
+bin*
diff --git a/setup.cfg b/setup.cfg
index f297375..202ec2d 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,25 +1,26 @@
[metadata]
-name = napari-segment
-
-author = Andrey Aristov
-author_email = aaristov@pasteur.fr
-url = https://github.com/aaristov/napari-segment
-license = BSD-3-Clause
+name = napari_segment
description = Segment organoids and measure intensities
long_description = file: README.md
long_description_content_type = text/markdown
+url = https://github.com/aaristov/napari-segment
+author = Andrey Aristov
+author_email = aaristov@pasteur.fr
+license = BSD-3-Clause
+license_file = LICENSE
classifiers =
Development Status :: 2 - Pre-Alpha
- Intended Audience :: Developers
Framework :: napari
- Topic :: Software Development :: Testing
+ Intended Audience :: Developers
+ License :: OSI Approved :: BSD License
+ Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3
+ Programming Language :: Python :: 3 :: Only
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
- Operating System :: OS Independent
- License :: OSI Approved :: BSD License
+ Topic :: Software Development :: Testing
project_urls =
Bug Tracker = https://github.com/aaristov/napari-segment/issues
Documentation = https://github.com/aaristov/napari-segment#README.md
@@ -28,22 +29,24 @@ project_urls =
[options]
packages = find:
-include_package_data = True
-python_requires = >=3.8
-package_dir =
- =src
-setup_requires = setuptools_scm
-# add your package requirements here
install_requires =
nd2
numpy
+ scikit-image
+ zarr
+python_requires = >=3.8
+include_package_data = True
+package_dir =
+ =src
+setup_requires =
+ setuptools-scm
[options.packages.find]
where = src
+[options.entry_points]
+napari.manifest =
+ napari-segment = napari_segment:napari.yaml
+
[options.package_data]
* = *.yaml
-
-[options.entry_points]
-napari.manifest =
- napari-segment = napari_segment:napari.yaml
diff --git a/src/napari_segment/_reader.py b/src/napari_segment/_reader.py
index 0196ab7..cb88a94 100644
--- a/src/napari_segment/_reader.py
+++ b/src/napari_segment/_reader.py
@@ -41,7 +41,10 @@ def napari_get_reader(path):
return read_zarr
# otherwise we return the *function* that can read ``path``.
- return reader_function
+ if path.endswith(".npy"):
+ return reader_function
+
+ return None
def read_zarr(path):
--
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