diff --git a/conversion_widget.ipynb b/conversion_widget.ipynb
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@@ -0,0 +1,357 @@
+{
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+ {
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+ "execution_count": 35,
+ "id": "0680c4c1-3b25-4a86-a58a-4feefdf92df5",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
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+ "/home/aaristov/miniconda3/envs/nd2/lib/python3.8/site-packages/napari_tools_menu/__init__.py:179: FutureWarning: Public access to Window.qt_viewer is deprecated and will be removed in\n",
+ "v0.5.0. It is considered an \"implementation detail\" of the napari\n",
+ "application, not part of the napari viewer model. If your use case\n",
+ "requires access to qt_viewer, please open an issue to discuss.\n",
+ " self.tools_menu = ToolsMenu(self, self.qt_viewer.viewer)\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "opening /home/aaristov/Anchor/Lena/Data/E.coli/Ciprofloxacin/20220827-ecoli-cipro/day1/TRITC.nd2\n",
+ "{'P': 6, 'Z': 31, 'Y': 7138, 'X': 22543}\n",
+ "No channels, {'P': 6, 'Z': 31, 'Y': 7138, 'X': 22543}\n",
+ "[6, 31, 7138, 22543] 6\n"
+ ]
+ }
+ ],
+ "source": [
+ "from napari import Viewer, run\n",
+ "from napari.layers import Image, Layer\n",
+ "\n",
+ "from qtpy.QtWidgets import QWidget, QVBoxLayout, QLabel, QComboBox, QPushButton\n",
+ "\n",
+ "from magicgui.widgets import create_widget, Label\n",
+ "\n",
+ "from matplotlib.backends.backend_qtagg import (\n",
+ " FigureCanvas, NavigationToolbar2QT as NavigationToolbar)\n",
+ "from matplotlib.figure import Figure\n",
+ "\n",
+ "\n",
+ "class SamplePlugin(QWidget):\n",
+ " def __init__(self, viewer: Viewer):\n",
+ " super().__init__()\n",
+ " self.viewer = viewer\n",
+ " self.select_image = create_widget(label=\"BF\", annotation=Image)\n",
+ " self.select_mask = create_widget(label=\"mask\", annotation=Layer)\n",
+ " self.canvas = FigureCanvas(Figure(figsize=(5,5)))\n",
+ " self.ax = self.canvas.figure.subplots()\n",
+ "\n",
+ " self.ax.plot([0, 5, 6], [2, 7, 14])\n",
+ " \n",
+ " self.dims = []\n",
+ " \n",
+ " ll = QLabel()\n",
+ " ll.setText('BF')\n",
+ " self.mm = QLabel()\n",
+ " self.mm.setText('mask')\n",
+ " \n",
+ " self.btn = QPushButton(\"Add operation\")\n",
+ " self.btn.clicked.connect(self.add_op)\n",
+ " \n",
+ " self.layout = QVBoxLayout()\n",
+ " self.layout.addWidget(ll)\n",
+ " self.layout.addWidget(self.select_image.native)\n",
+ " self.layout.addStrut(1)\n",
+ " self.layout.addWidget(self.mm)\n",
+ " # layout.addWidget(self.select_mask.native)\n",
+ " # layout.addWidget(self.canvas)\n",
+ "\n",
+ " self.setLayout(self.layout)\n",
+ " \n",
+ " def reset_choices(self, event=None):\n",
+ " self.select_image.reset_choices(event)\n",
+ " self.select_mask.reset_choices(event)\n",
+ " \n",
+ " self.dims.append(viewer.layers[self.select_image.current_choice].data.shape)\n",
+ " \n",
+ " self.mm.setText(str(self.dims[-1]))\n",
+ " \n",
+ " self.combo = QComboBox()\n",
+ " self.combo.addItems(['max_projection', 'split_dims', 'export'])\n",
+ " self.combo.currentIndexChanged.connect(self.choose_op)\n",
+ " self.layout.addWidget(self.combo)\n",
+ " self.layout.addWidget(self.btn)\n",
+ " \n",
+ " def choose_op(self, i):\n",
+ " print(f'{i} selected: {self.combo.currentText()}')\n",
+ " \n",
+ " def add_op(self):\n",
+ " op = QLabel()\n",
+ " op.setText(self.combo.currentText())\n",
+ " self.layout.addWidget(op)\n",
+ " \n",
+ " combo = QComboBox()\n",
+ " combo.addItems(map(str, self.dims[-1]))\n",
+ " self.layout.addWidget(combo)\n",
+ " \n",
+ " qdim = QLabel()\n",
+ " self.layout.addWidget(qdim)\n",
+ " self.dims.append(rm_dim(self.dims[-1], combo.currentText()))\n",
+ " combo.currentIndexChanged.connect(lambda: qdim.setText('Output shape: ' + str(self.dims[-1])))\n",
+ " \n",
+ " \n",
+ "\n",
+ "\n",
+ "\n",
+ "viewer = Viewer()\n",
+ "\n",
+ "plugin = SamplePlugin(viewer)\n",
+ "\n",
+ "viewer.window.add_dock_widget(plugin)\n",
+ "\n",
+ "run()"
+ ]
+ },
+ {
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