Commit 309e3586 authored by Andrey  ARISTOV's avatar Andrey ARISTOV
Browse files

add segmentation manual

parent c6660b57
Pipeline #25212 passed with stage
in 50 seconds
......@@ -30,5 +30,25 @@
- Pos_001.tif <- D1, D2 images for well 1
- Pos_002.tif <- D1, D2 images for well 2
# Segment organoids in bright field
### Use
`python -m segment dataset.nd2`
#### Input:
- Folder:
- D1:
- dataset.nd2
#### Output:
- Folder:
- D1:
- dataset.nd2
- dataset_stats.csv <- table with columns (area, eccentricity, major_axis_length) all in pixels.
- dataset:
- Pos_000.png
- Pos_001.png
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