From 7512af6cc3c9f6dcf24cf88338b64a2a9fcdca18 Mon Sep 17 00:00:00 2001
From: Andrey Aristov <aaristov@pasteur.fr>
Date: Thu, 2 Jun 2022 17:36:09 +0200
Subject: [PATCH] register smoothed
---
src/droplet_growth/register.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/droplet_growth/register.py b/src/droplet_growth/register.py
index 6d2d927..bc36ead 100644
--- a/src/droplet_growth/register.py
+++ b/src/droplet_growth/register.py
@@ -55,7 +55,7 @@ def align_stack(data_or_path, template16, mask2, plot=False, path_to_save=None,
stack_mask_scale = binnings[2] // binnings[0]
f_bf = bf[::stack_temp_scale, ::stack_temp_scale]
-
+ f_bf_sm = ndi.gaussian_filter(f_bf, 2)
# f_bf = filter_by_fft(
# bf[::stack_temp_scale, ::stack_temp_scale],
# sigma=40,
@@ -63,7 +63,7 @@ def align_stack(data_or_path, template16, mask2, plot=False, path_to_save=None,
# fix_vertical_stripes=True,
# highpass=True
# )
- tvec8 = get_transform(f_bf, template16, plot=plot)
+ tvec8 = get_transform(f_bf_sm, template16, plot=plot)
plt.show()
tvec = scale_tvec(tvec8, mask_temp_scale)
print(tvec)
--
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