diff --git a/segment_neurons_czi_3.ipynb b/segment_neurons_czi_3.ipynb index ce859d5e09be65304583cd391ab93e2d9c59622e..97f7f505efcf7f3a0b93799f6abc89e349725727 100644 --- a/segment_neurons_czi_3.ipynb +++ b/segment_neurons_czi_3.ipynb @@ -97,7 +97,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 1, "metadata": {}, "outputs": [], "source": [ @@ -140,11 +140,11 @@ " 'size_px': prop.major_axis_length,\n", " 'area': prop.area,\n", " 'perimeter': prop.perimeter,\n", - " 'circularity': prop.area / (prop.perimeter ** 2),\n", + " 'circularity': prop.area / (prop.perimeter ** 2) * 4 * np.pi,\n", " 'convex_area': convex_prop.area,\n", " 'convex_eccentricity': convex_prop.eccentricity,\n", " 'convex_perimeter': convex_prop.perimeter,\n", - " 'convex_circularity': convex_prop.area / (convex_prop.perimeter ** 2),\n", + " 'convex_circularity': convex_prop.area / (convex_prop.perimeter ** 2) * 4 * np.pi,\n", " 'convex_eccentricity': convex_prop.eccentricity,\n", " 'tritc': I_tritc,\n", " 'fitc': I_fitc,\n", @@ -3758,9 +3758,9 @@ ], "metadata": { "kernelspec": { - "display_name": "Python 3.8.1 64-bit ('nd2': conda)", + "display_name": "Python 3", "language": "python", - "name": "python38164bitnd2condab83ba3ce95e14ed3a7bb493fbab3598e" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -3772,7 +3772,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.1" + "version": "3.8.3" } }, "nbformat": 4,