From de4a9a33d0fd8cb3dc927e34782de73dd41b774e Mon Sep 17 00:00:00 2001
From: Andrey Aristov <aaristov@pasteur.fr>
Date: Tue, 29 Sep 2020 16:49:57 +0200
Subject: [PATCH] update circularity with 4pi
---
segment_neurons_czi_3.ipynb | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/segment_neurons_czi_3.ipynb b/segment_neurons_czi_3.ipynb
index ce859d5..97f7f50 100644
--- a/segment_neurons_czi_3.ipynb
+++ b/segment_neurons_czi_3.ipynb
@@ -97,7 +97,7 @@
},
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
@@ -140,11 +140,11 @@
" 'size_px': prop.major_axis_length,\n",
" 'area': prop.area,\n",
" 'perimeter': prop.perimeter,\n",
- " 'circularity': prop.area / (prop.perimeter ** 2),\n",
+ " 'circularity': prop.area / (prop.perimeter ** 2) * 4 * np.pi,\n",
" 'convex_area': convex_prop.area,\n",
" 'convex_eccentricity': convex_prop.eccentricity,\n",
" 'convex_perimeter': convex_prop.perimeter,\n",
- " 'convex_circularity': convex_prop.area / (convex_prop.perimeter ** 2),\n",
+ " 'convex_circularity': convex_prop.area / (convex_prop.perimeter ** 2) * 4 * np.pi,\n",
" 'convex_eccentricity': convex_prop.eccentricity,\n",
" 'tritc': I_tritc,\n",
" 'fitc': I_fitc,\n",
@@ -3758,9 +3758,9 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3.8.1 64-bit ('nd2': conda)",
+ "display_name": "Python 3",
"language": "python",
- "name": "python38164bitnd2condab83ba3ce95e14ed3a7bb493fbab3598e"
+ "name": "python3"
},
"language_info": {
"codemirror_mode": {
@@ -3772,7 +3772,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.8.1"
+ "version": "3.8.3"
}
},
"nbformat": 4,
--
GitLab