diff --git a/flip_timelapse_SUMO.py b/flip_timelapse_SUMO.py index 4a876deb2f15fb757fcacd233510f7825f33584a..9def8319e7c77317e462b66745bf9bc77f2e64a9 100644 --- a/flip_timelapse_SUMO.py +++ b/flip_timelapse_SUMO.py @@ -12,13 +12,13 @@ logger = logging.getLogger(__name__) path = "/home/aaristov/Multicell/Sebastien/mESC_aggregates/SUMO/SOX1-T_Movie/{well}/POINT 00001/aligned.tif" coords = { - "H10": [34, 35, 36, 37, 38, 39, 40], - "I12": [15, 18, 20], - "J08": [37], - "J12": [27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40], - "J15": range(13, 40), - "L13": [14, 17, 36, 37, 38, 39, 40], - "N06": [17], + # "H10": [34, 35, 36, 37, 38, 39, 40], + # "I12": [15, 18, 20], + # "J08": [37], + # "J12": [27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40], + "J15": [1,2,3,4,34,35,36,37,38], + # "L13": [14, 17, 36, 37, 38, 39, 40], + # "N06": [17], } def flip_gfp_rfp_values(csv_file_path, frames_to_flip): @@ -54,7 +54,7 @@ def flip_frames(file_path, frames_to_flip): new_file_path = file_path.replace('aligned.tif', 'realigned.tif') assert new_file_path != file_path - flip_gfp_rfp_values(file_path.replace("aligned.tif", "peaks.csv"), frames_to_flip) + # flip_gfp_rfp_values(file_path.replace("aligned.tif", "peaks.csv"), frames_to_flip) try: assert not os.path.exists(new_file_path)