diff --git a/readme.md b/readme.md index 7c0144ebd9d03f4340de6b60b6d6c625f43b5711..cb2e03b69a619190f8b0afcad54fb59c3851057d 100644 --- a/readme.md +++ b/readme.md @@ -1,5 +1,14 @@ # nd2 to tif conversion tools +## Installation + +1. Download and install [miniconda3](https://docs.conda.io/en/latest/miniconda.html) +2. Create new environment with python 3.8 + - `conda create -n nd2 python=3.8` + - `conda activate nd2` +3. Install the package `pip install -U git+https://gitlab.pasteur.fr/aaristov/nd2shrink.git` + + ## Compress nd2 to tif with 4x binning and 16 to 8 bits conversion ### Use: @@ -10,7 +19,7 @@ ### Use -`python -m nd2_combine folder` +`python -m nd2_combine path_to_folder` #### Input: