Commit c0b95d37 authored by Anne  BITON's avatar Anne BITON
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# Two sequential and independent pathways of erythromyeloid progenitor commitment in their niche of emergence. Lorea Iturri; Laina Freyer; Anne Biton; Pascal Dardenne; Yvan Lallemand; Elisa Gomez Perdiguero.
This repository contains the code used for the analyses of the scRNASeq described in this manuscript under /src/YS.
This repository contains the code used for the analyses of the scRNASeq data described in this manuscript under /src/YS.
## Project organisation
Raw data is stored in /data/raw (not available here because of size constraints) and converted depending on its particularities to a dataset that is stored in /data/derived.
How to load the UMI count data from GEO will be added shortly.
Raw UMI count (before any filtering step) and cell annotation data are available in /data/raw for the yolk sac ("YS_").
UMI counts and cell annotations for both yolk sac and fetal liver are also available at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166223.
Data generated throughout the scripts will be saved under /data/derived.
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