Activate gitlab-ci on current version

conda_inst/build.sh

 #!/bin/bash
 BINDIR="$PREFIX/bin"
 echo "$BINDIR"
-cd $SRC_DIR/src/
+cd $SRC_DIR/alientrimmerapp/src/
 ./JarMaker.sh
 mv AlienTrimmer.jar $BINDIR/
 echo -e "#!/bin/bash\nSCRIPTPATH=\$(dirname \"\${BASH_SOURCE[0]}\")\njava -jar \$SCRIPTPATH/AlienTrimmer.jar \$@" > $BINDIR/AlienTrimmer

conda_inst/meta.yaml

@@ -10,6 +10,7 @@ channels:
 source:
   - git_url: https://gitlab.pasteur.fr/aghozlan/alientrimmer.git
     git_rev: {{ environ.get('GIT_DESCRIBE_TAG', '') }}
+    folder: alientrimmerapp
   #url: ftp://ftp.pasteur.fr/pub/gensoft/projects/AlienTrimmer/AlienTrimmer_0.4.0.tar.gz
   #md5: 8ed76aafea9fef48f49d74b59025212d