Skip to content

GitLab

Commit 2f9a9616 authored by Amine GHOZLANE's avatar Amine GHOZLANE
Browse files
Options

Change database for nr

parent 1e7d9b10
Pipeline #7080 failed with stages
          in 50 seconds
          Hide whitespace changes
          Inline Side-by-side
          Showing with 3 additions and 3 deletions
          blast_approach.nf
          View file @ 2f9a9616
          ......@@ -56,7 +56,7 @@ params.genomes = "$baseDir/databases/genomes_resume.fasta"
          params.alienseq = "$baseDir/databases/alienTrimmerPF8contaminants.fasta"
          params.minlength = 35
          //params.nrdb = "/local/databases/index/diamond/nrprot/nr.dmnd"
          params.nrdb = "/pasteur/scratch/amine/nr.dmnd"
          params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd"
          //params.not_aligned = "${baseDir}/not_aligned/"
          params.mail = "amine.ghozlane@pasteur.fr"
          params.memory_mbma = 60000
          ......
          blast_approach_galaxy.nf
          View file @ 2f9a9616
          ......@@ -38,7 +38,7 @@ params.mouse = "/local/databases/index/bowtie/2.1.0/mm10.fa"
          params.phi = "/local/databases/index/bowtie/2.1.0/phiX.fa"
          params.nt = "/local/databases/fasta/nt"
          params.taxadb = "/local/databases/rel/taxadb/current/db/taxadb_full.sqlite"
          params.nrdb = "/pasteur/scratch/amine/nr.dmnd"
          params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd"
          myDir = file(params.out)
          myDir.mkdirs()
          ......
          blast_approach_tars.nf
          View file @ 2f9a9616
          ......@@ -38,7 +38,7 @@ params.mouse = "/local/databases/index/bowtie/2.1.0/mm10.fa"
          params.phi = "/local/databases/index/bowtie/2.1.0/phiX.fa"
          params.nt = "/local/databases/fasta/nt"
          params.taxadb = "/local/databases/rel/taxadb/current/db/taxadb_full.sqlite"
          params.nrdb = "/pasteur/scratch/amine/nr.dmnd"
          params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd"
          myDir = file(params.out)
          myDir.mkdirs()
          ......
          Markdown is supported
          0% or .
          You are about to add 0 people to the discussion. Proceed with caution.
          Finish editing this message first!
          Please register or to comment