Commit 2f9a9616 authored by Amine  GHOZLANE's avatar Amine GHOZLANE

Change database for nr

parent 1e7d9b10
Pipeline #7080 failed with stages
in 50 seconds
......@@ -56,7 +56,7 @@ params.genomes = "$baseDir/databases/genomes_resume.fasta"
params.alienseq = "$baseDir/databases/alienTrimmerPF8contaminants.fasta"
params.minlength = 35
//params.nrdb = "/local/databases/index/diamond/nrprot/nr.dmnd"
params.nrdb = "/pasteur/scratch/amine/nr.dmnd"
params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd"
//params.not_aligned = "${baseDir}/not_aligned/"
params.mail = "amine.ghozlane@pasteur.fr"
params.memory_mbma = 60000
......
......@@ -38,7 +38,7 @@ params.mouse = "/local/databases/index/bowtie/2.1.0/mm10.fa"
params.phi = "/local/databases/index/bowtie/2.1.0/phiX.fa"
params.nt = "/local/databases/fasta/nt"
params.taxadb = "/local/databases/rel/taxadb/current/db/taxadb_full.sqlite"
params.nrdb = "/pasteur/scratch/amine/nr.dmnd"
params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd"
myDir = file(params.out)
myDir.mkdirs()
......
......@@ -38,7 +38,7 @@ params.mouse = "/local/databases/index/bowtie/2.1.0/mm10.fa"
params.phi = "/local/databases/index/bowtie/2.1.0/phiX.fa"
params.nt = "/local/databases/fasta/nt"
params.taxadb = "/local/databases/rel/taxadb/current/db/taxadb_full.sqlite"
params.nrdb = "/pasteur/scratch/amine/nr.dmnd"
params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd"
myDir = file(params.out)
myDir.mkdirs()
......
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