From 2f9a961630c581a87c0757b61359adee0261c02c Mon Sep 17 00:00:00 2001 From: Amine Ghozlane Date: Fri, 28 Sep 2018 14:53:45 +0200 Subject: [PATCH] Change database for nr --- blast_approach.nf | 2 +- blast_approach_galaxy.nf | 2 +- blast_approach_tars.nf | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/blast_approach.nf b/blast_approach.nf index c309cc0..4356657 100755 --- a/blast_approach.nf +++ b/blast_approach.nf @@ -56,7 +56,7 @@ params.genomes = "$baseDir/databases/genomes_resume.fasta" params.alienseq = "$baseDir/databases/alienTrimmerPF8contaminants.fasta" params.minlength = 35 //params.nrdb = "/local/databases/index/diamond/nrprot/nr.dmnd" -params.nrdb = "/pasteur/scratch/amine/nr.dmnd" +params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd" //params.not_aligned = "${baseDir}/not_aligned/" params.mail = "amine.ghozlane@pasteur.fr" params.memory_mbma = 60000 diff --git a/blast_approach_galaxy.nf b/blast_approach_galaxy.nf index fe153f7..accd027 100755 --- a/blast_approach_galaxy.nf +++ b/blast_approach_galaxy.nf @@ -38,7 +38,7 @@ params.mouse = "/local/databases/index/bowtie/2.1.0/mm10.fa" params.phi = "/local/databases/index/bowtie/2.1.0/phiX.fa" params.nt = "/local/databases/fasta/nt" params.taxadb = "/local/databases/rel/taxadb/current/db/taxadb_full.sqlite" -params.nrdb = "/pasteur/scratch/amine/nr.dmnd" +params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd" myDir = file(params.out) myDir.mkdirs() diff --git a/blast_approach_tars.nf b/blast_approach_tars.nf index d2dd1d3..92edf86 100755 --- a/blast_approach_tars.nf +++ b/blast_approach_tars.nf @@ -38,7 +38,7 @@ params.mouse = "/local/databases/index/bowtie/2.1.0/mm10.fa" params.phi = "/local/databases/index/bowtie/2.1.0/phiX.fa" params.nt = "/local/databases/fasta/nt" params.taxadb = "/local/databases/rel/taxadb/current/db/taxadb_full.sqlite" -params.nrdb = "/pasteur/scratch/amine/nr.dmnd" +params.nrdb = "/pasteur/services/policy01/banques/prod/rel/nrprot/nrprot_2018-09-16/diamond/0.9/nr.dmnd" myDir = file(params.out) myDir.mkdirs() -- 2.26.2