From 02b5f0e03935924184ceb10044ac263effec80b4 Mon Sep 17 00:00:00 2001
From: Amine Ghozlane <amine.ghozlane@pasteur.fr>
Date: Thu, 16 Jun 2022 10:37:21 +0200
Subject: [PATCH] No dup debug
---
measles_virus.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/measles_virus.nf b/measles_virus.nf
index 86e3dc5..171b33d 100644
--- a/measles_virus.nf
+++ b/measles_virus.nf
@@ -142,7 +142,7 @@ process extract_snp {
output:
file("*_snp*.tsv") into snpChannel
file("*_mpileup.vcf.gz") into vcfChannel
- file("*_nodup.bam"
+ file("*_nodup.bam") into nodupbam
script:
"""
@@ -210,6 +210,7 @@ process compute_frequencies {
round(frequency, 3)), file=output)
"""
}
+
process counts_measles {
//publishDir "$myDir", mode: 'copy'
memory "2G"
--
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